Open Problems in Single-Cell Analysis

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30 packages

methods/ssam
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

11
loaders/scrnaseq/cellxgene_census
Published Jun 20, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/datasets

11
reporting/filter_results
Published Aug 19, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/openproblems

11
methods/gene_efficiency_correction
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

10
control_methods/embed_by_cell_type
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

10
methods/cytonorm_all_controls
Published Jul 17, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

10
control_methods/shuffle_integration_globally
Published Feb 4, 2026 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

10
loaders/multimodal/openproblems_neurips2022_pbmc
Published Jun 20, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/datasets

10
methods/cytonorm_no_controls
Published Jul 17, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

10
loaders/scrnaseq/openproblems_v1
Published Jun 20, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/datasets

9
transformers/transform
Published Sep 21, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_batch_integration

9
process_data/op_multiome
Published Feb 26, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

9
dataset_processors/select_reference
Published Sep 20, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatially_variable_genes

9
dataset_processors/simulate_svg
Published Sep 20, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatially_variable_genes

9
metrics/accuracy
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

9
loaders/scrnaseq/openproblems_op3
Published Jul 29, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/datasets

9
methods/scenicplus
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

9
dataset_processors/split_dataset
Published Sep 20, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_spatially_variable_genes

8
grn_methods/grnboost2_dup
Published Jul 14, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

8
methods/logistic_regression
Published Nov 5, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

8
methods/basic_qc_filter
Published Sep 22, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

8
methods/multiome
Published Aug 1, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

8
metrics/ratio_consistent_peaks
Published Feb 6, 2026 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

8
methods/cytonorm_one_control
Published Jul 17, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

8
methods_transcript_assignment/basic
Published Sep 23, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

7
methods/logistic_regression
Published Sep 2, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_dimensionality_reduction

7
methods_transcript_assignment/clustermap_transcript_assignment
Published Sep 13, 2025 by Open Problems in Single-Cell Analysis in openproblems-bio/task_ist_preprocessing

7
multiome_matrix
Published Aug 1, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

7
scglue
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_grn_inference

7
control_methods/true_labels
Published Nov 5, 2024 by Open Problems in Single-Cell Analysis in openproblems-bio/task_cyto_batch_integration

7