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+4
-7
lines changed

3 files changed

+4
-7
lines changed

kb_python/config.py

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -169,7 +169,8 @@ class Technology(NamedTuple):
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),
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Technology('Visium', '10x Visium', ngs.chemistry.get_chemistry('visium')),
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Technology(
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'SPLIT-SEQ', 'SPLiT-seq (version 2)', ngs.chemistry.get_chemistry('split-seq')
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'SPLIT-SEQ', 'SPLiT-seq (version 2)',
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ngs.chemistry.get_chemistry('split-seq')
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),
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],
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key=lambda t: t.name)

kb_python/count.py

Lines changed: 1 addition & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -87,9 +87,7 @@
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INSPECT_PARSER = re.compile(r'^.*?(?P<count>[0-9]+)')
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def make_transcript_t2g(
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txnames_path: str, out_path: str
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) -> str:
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def make_transcript_t2g(txnames_path: str, out_path: str) -> str:
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"""Make a two-column t2g file from a transcripts file
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Args:

kb_python/main.py

Lines changed: 1 addition & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1245,9 +1245,7 @@ def setup_count_args(
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)
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parser_count.add_argument(
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'--exact-barcodes',
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help=(
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'Only exact matches are used for matching barcodes to on-list.'
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),
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help=('Only exact matches are used for matching barcodes to on-list.'),
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action='store_true'
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)
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parser_count.add_argument(

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