Filtering genes in sleuth object

[m-kouhsar]

Hi,

I’m using this package to read kallisto results and perform a DEG analysis. I have a question about it.
How can I filter genes in a sleuth object (so) after reading the data and generating the object with the sleuth_prep function?
I couldn’t find any function for this. The only option I came across is the filter_target_id argument in sleuth_prep, but that applies filtering before generating the sleuth object, and more importantly, it overrides the default filtering. Is there a way to filter genes afterward?

Kind regards,
Morteza