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fix test
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func_tests/runtests.sh

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -52,7 +52,7 @@ cmdexec "$splitcode --version"
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checkcmdoutput "$splitcode --trim-only -c $test_dir/nest_config.txt --pipe --mod-names $test_dir/nest.test.1.R1.fq $test_dir/nest.test.1.R1.fa" 20484a6b5ba1f3c10931417310925ca9
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checkcmdoutput "$splitcode --trim-only -c $test_dir/nest_config_2.txt --pipe --out-fasta --mod-names -N 2 $test_dir/nest.test.1.R1.fq $test_dir/nest.test.1.R2.fq $test_dir/nest.test.2.R1.fq $test_dir/nest.test.2.R2.fq" 9f1f430f7db125657c52653b298ee138
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checkcmdoutput "$splitcode --trim-only -s $test_dir/summary.nest.txt -c $test_dir/nest_config_3.txt --pipe --empty=NNN --out-fasta --mod-names -N 2 $test_dir/nest.test.1.R1.fq $test_dir/nest.test.1.R2.fq $test_dir/nest.test.2.R1.fq $test_dir/nest.test.2.R2.fq" 6dabc80d0b3d813d07ab68fd313d2772
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checkcmdoutput "cat $test_dir/summary.nest.txt|head -10|wc -l" 8fc4216241c8372cdcf964ecaf84b8fc
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checkcmdoutput "cat $test_dir/summary.nest.txt|head -10|wc -l|tr -d '\n'|tr -d '\r'|tr -d ' '" d3d9446802a44259755d38e6d163e820
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checkcmdoutput "$splitcode --trim-only -c $test_dir/nest_config_2.txt -o $test_dir/out.nest.1.fq,$test_dir/out.nest.2.fq,$test_dir/out.nest.3.fq --mod-names -N 2 $test_dir/nest.test.1.R1.fq $test_dir/nest.test.1.R2.fq $test_dir/nest.test.2.R1.fq $test_dir/nest.test.2.R2.fq" d41d8cd98f00b204e9800998ecf8427e
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checkcmdoutput "cat $test_dir/out.nest.1.fq" 46e08a3f066c9ae5a741a31cf6d785fb
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checkcmdoutput "cat $test_dir/out.nest.2.fq" 547e739c16eaa5495d1e566146ca2b65

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