Skip to content

Commit d3066d8

Browse files
YenaledYenaled
authored
Upload some functional testing files
1 parent 734875a commit d3066d8

File tree

8 files changed

+104
-0
lines changed

8 files changed

+104
-0
lines changed

‎func_tests/config.tsv‎

Lines changed: 10 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,10 @@
1+
groups ids tags distances locations previous
2+
NYStgBot Y18 TCTCCTTACG 0:0:0 0:0:11 -
3+
NYStgBot Y32 TGTAGTTCTA 0:1:1 0:0:11 -
4+
OddBot3 O45 GCCTAGTAGAAGACGTT 2:2:2 0:11:0 {{NYStgBot}}4-10
5+
EvenBot2 E41 ATAGATTGTTGCGTGCT 2:2:2 0:11:0 {{OddBot3}}4-10
6+
OddBot2 O21 GGATAGCACCGTTCATT 1:1:1 0:11:0 {{EvenBot2}}4-10
7+
EvenBot1 E2 TGTAGGTTCTGGAATAT 0:0:0 0:11:0 {{OddBot2}}4-10
8+
OddBot1 O85 GCTGTGTCTGTCACCT 1:1:1 0:11:0 {{EvenBot1}}4-10
9+
DPM_const DPM_const TCATGTCTTCCGATCT 2:0:2 0:11:0 {{OddBot1}}4-10
10+
DPM_R2 DPM1 TGGGTGTTT 1:0:1 0:11:0 {DPM_const}0-0

‎func_tests/config_.tsv‎

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,4 @@
1+
tags locations
2+
TGTAGG 0:0:0
3+
TGTAGGTT 0:0:0
4+
TGGG 0:0:0

‎func_tests/config__.tsv‎

Lines changed: 15 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,15 @@
1+
ids tags distance
2+
tagT TTT 0
3+
tagT TTTT 0
4+
tagT TTTTT 0
5+
tagT TTTTTT 0
6+
tagT TTTTTTT 0
7+
tagT TTTTTTTT 0
8+
tagT TTTTTTTTT 0
9+
tagT TTTTTTTTTT 1
10+
tagT TTTTTTTTTTT 1
11+
tagT TTTTTTTTTTTT 1
12+
tagT TTTTTTTTTTTTT 1
13+
tagT TTTTTTTTTTTTTT 1
14+
tagT TTTTTTTTTTTTTTT 1
15+

‎func_tests/config___.tsv‎

Lines changed: 5 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,5 @@
1+
ids tags distance partial5
2+
tagT TTTTTTTTTT 0 3:0.2
3+
tagA AAAAAAAAAA 1 3:0.2
4+
tagG GGGGGGGGGG 1 -
5+

‎func_tests/input.fastq‎

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,4 @@
1+
@r1
2+
TCTCCTTACGGACAACTGCCTAGTAGAAGACGTTTGACTTGATAGATTGTTGCGTGCTCACAACTGGATAGCACCGTTCATTTGACTTGTGTAGGTTCTGGAATATGACAACTGCTGTGTCTGTCACCTTTGACTTGTCA
3+
+
4+
TCTCCTTACGGACAACTGCCTAGTAGAAGACGTTTGACTTGATAGATTGTTGCGTGCTCACAACTGGATAGCACCGTTCATTTGACTTGTGTAGGTTCTGGAATATGACAACTGCTGTGTCTGTCACCTTTGACTTGTCA

‎func_tests/input_.fastq‎

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,4 @@
1+
@r
2+
NNNNNNNNNNTGACTTGTGTAGGTTCTGGAAT
3+
+
4+
NNNNNNNNNNTGACTTGTGTAGGTTCTGGAAT

‎func_tests/input__.fastq‎

Lines changed: 21 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,21 @@
1+
@11_bp_no_mismatch
2+
AAATTTTTTTTTTTAAA
3+
+
4+
;;;;;;;;;;;;;;;;;
5+
@11_bp_1_internal_mismatch
6+
AAATTTTTTTTTCTAAA
7+
+
8+
;;;;;;;;;;;;;;;;;
9+
@11_bp_1_internal_mismatch2
10+
AAATTTTTTTTCTTAAA
11+
+
12+
;;;;;;;;;;;;;;;;;
13+
@11_bp_1_5prime_mismatch
14+
AAACTTTTTTTTTTAAA
15+
+
16+
;;;;;;;;;;;;;;;;;
17+
@11_bp_1_3prime_mismatch
18+
AAATTTTTTTTTTCAAA
19+
+
20+
;;;;;;;;;;;;;;;;;
21+

‎func_tests/input___.fastq‎

Lines changed: 41 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,41 @@
1+
@read1 5prime tagT
2+
TTTTTTTTTT
3+
+
4+
;;;;;;;;;;
5+
@read2 5prime tagT with 3prime substitution
6+
TTTTTTTTTC
7+
+
8+
;;;;;;;;;;
9+
@read3 5prime tagT with interior substitution
10+
TTTCTTTTTT
11+
+
12+
;;;;;;;;;;
13+
@read4 5prime tagT with interior substitution within first 3 bp
14+
TTCTTTTTTT
15+
+
16+
;;;;;;;;;;
17+
@read5 5prime tagT with interior substitution within first 3 bp
18+
TCTTTTTTTT
19+
+
20+
;;;;;;;;;;
21+
@read6 5prime tagT with 5prime substitution
22+
CTTTTTTTTT
23+
+
24+
;;;;;;;;;;
25+
@read7 5prime tagT with 5prime and 3prime substitutions
26+
CTTTTTTTTC
27+
+
28+
;;;;;;;;;;
29+
@read8 5prime tagT with 5prime and interior substitutions
30+
CTTTTTTCTT
31+
+
32+
;;;;;;;;;;
33+
@read9 5prime tagA with 5prime and interior substitutions; like read3
34+
AAACAAAAAA
35+
+
36+
;;;;;;;;;;
37+
@read10 5prime tagG with 5prime and interior substitutions; like read3
38+
GGGCGGGGGG
39+
+
40+
;;;;;;;;;;
41+

0 commit comments

Comments
 (0)