Merge branch 'main' into dependabot/github_actions/pypa/cibuildwheel-2.21.0

Author: mroeschke

.github/actions/setup-conda/action.yml

@@ -9,6 +9,8 @@ runs:
     - name: Install ${{ inputs.environment-file }}
       uses: mamba-org/setup-micromamba@v1
       with:
+        # Pinning to avoid 2.0 failures
+        micromamba-version: '1.5.10-0'
         environment-file: ${{ inputs.environment-file }}
         environment-name: test
         condarc-file: ci/.condarc

.github/workflows/code-checks.yml

@@ -4,11 +4,11 @@ on:
   push:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
   pull_request:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
 
 env:
   ENV_FILE: environment.yml

.github/workflows/docbuild-and-upload.yml

@@ -4,13 +4,13 @@ on:
   push:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
     tags:
       - '*'
   pull_request:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
 
 env:
   ENV_FILE: environment.yml

.github/workflows/package-checks.yml

@@ -4,11 +4,11 @@ on:
   push:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
   pull_request:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
     types: [ labeled, opened, synchronize, reopened ]
 
 permissions:
@@ -67,7 +67,7 @@ jobs:
           fetch-depth: 0
 
       - name: Set up Python
-        uses: mamba-org/setup-micromamba@v1
+        uses: mamba-org/setup-micromamba@v2
         with:
           environment-name: recipe-test
           create-args: >-

.github/workflows/unit-tests.yml

@@ -4,11 +4,11 @@ on:
   push:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
   pull_request:
     branches:
       - main
-      - 2.2.x
+      - 2.3.x
     paths-ignore:
       - "doc/**"
       - "web/**"

.github/workflows/wheels.yml

@@ -165,7 +165,7 @@ jobs:
           CIBW_PLATFORM: ${{ matrix.buildplat[1] == 'pyodide_wasm32' && 'pyodide' || 'auto' }}
 
       - name: Set up Python
-        uses: mamba-org/setup-micromamba@v1
+        uses: mamba-org/setup-micromamba@v2
         with:
           environment-name: wheel-env
           # Use a fixed Python, since we might have an unreleased Python not

.pre-commit-config.yaml

@@ -19,7 +19,7 @@ ci:
     skip: [pyright, mypy]
 repos:
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.5.0
+    rev: v0.6.9
     hooks:
     -   id: ruff
         args: [--exit-non-zero-on-fix]
@@ -34,7 +34,7 @@ repos:
     -   id: ruff-format
         exclude: ^scripts|^pandas/tests/frame/test_query_eval.py
 -   repo: https://github.com/jendrikseipp/vulture
-    rev: 'v2.11'
+    rev: 'v2.13'
     hooks:
       - id: vulture
         entry: python scripts/run_vulture.py
@@ -52,7 +52,7 @@ repos:
     -   id: cython-lint
     -   id: double-quote-cython-strings
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.6.0
+    rev: v5.0.0
     hooks:
     -   id: check-case-conflict
     -   id: check-toml
@@ -90,12 +90,12 @@ repos:
         types: [text]  # overwrite types: [rst]
         types_or: [python, rst]
 -   repo: https://github.com/sphinx-contrib/sphinx-lint
-    rev: v0.9.1
+    rev: v1.0.0
     hooks:
     - id: sphinx-lint
       args: ["--enable", "all", "--disable", "line-too-long"]
 -   repo: https://github.com/pre-commit/mirrors-clang-format
-    rev: v18.1.8
+    rev: v19.1.1
     hooks:
     - id: clang-format
       files: ^pandas/_libs/src|^pandas/_libs/include

ci/code_checks.sh

@@ -73,53 +73,23 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.Period.freq GL08" \
         -i "pandas.Period.ordinal GL08" \
         -i "pandas.RangeIndex.from_range PR01,SA01" \
-        -i "pandas.Series.cat.add_categories PR01,PR02" \
-        -i "pandas.Series.cat.as_ordered PR01" \
-        -i "pandas.Series.cat.as_unordered PR01" \
-        -i "pandas.Series.cat.remove_categories PR01,PR02" \
-        -i "pandas.Series.cat.remove_unused_categories PR01" \
-        -i "pandas.Series.cat.rename_categories PR01,PR02" \
-        -i "pandas.Series.cat.reorder_categories PR01,PR02" \
-        -i "pandas.Series.cat.set_categories PR01,PR02" \
-        -i "pandas.Series.dt.as_unit PR01,PR02" \
-        -i "pandas.Series.dt.ceil PR01,PR02" \
-        -i "pandas.Series.dt.day_name PR01,PR02" \
-        -i "pandas.Series.dt.floor PR01,PR02" \
         -i "pandas.Series.dt.freq GL08" \
-        -i "pandas.Series.dt.month_name PR01,PR02" \
-        -i "pandas.Series.dt.normalize PR01" \
-        -i "pandas.Series.dt.round PR01,PR02" \
-        -i "pandas.Series.dt.strftime PR01,PR02" \
-        -i "pandas.Series.dt.to_period PR01,PR02" \
-        -i "pandas.Series.dt.total_seconds PR01" \
-        -i "pandas.Series.dt.tz_convert PR01,PR02" \
-        -i "pandas.Series.dt.tz_localize PR01,PR02" \
         -i "pandas.Series.dt.unit GL08" \
         -i "pandas.Series.pad PR01,SA01" \
-        -i "pandas.Series.sparse.from_coo PR07,SA01" \
-        -i "pandas.Series.sparse.npoints SA01" \
         -i "pandas.Timedelta.max PR02" \
         -i "pandas.Timedelta.min PR02" \
         -i "pandas.Timedelta.resolution PR02" \
-        -i "pandas.TimedeltaIndex.to_pytimedelta RT03,SA01" \
         -i "pandas.Timestamp.max PR02" \
         -i "pandas.Timestamp.min PR02" \
         -i "pandas.Timestamp.nanosecond GL08" \
         -i "pandas.Timestamp.resolution PR02" \
         -i "pandas.Timestamp.tzinfo GL08" \
         -i "pandas.Timestamp.year GL08" \
-        -i "pandas.api.types.is_dict_like PR07,SA01" \
-        -i "pandas.api.types.is_file_like PR07,SA01" \
-        -i "pandas.api.types.is_float PR01,SA01" \
-        -i "pandas.api.types.is_hashable PR01,RT03,SA01" \
         -i "pandas.api.types.is_integer PR01,SA01" \
         -i "pandas.api.types.is_iterator PR07,SA01" \
-        -i "pandas.api.types.is_named_tuple PR07,SA01" \
-        -i "pandas.api.types.is_re PR07,SA01" \
         -i "pandas.api.types.is_re_compilable PR07,SA01" \
         -i "pandas.api.types.pandas_dtype PR07,RT03,SA01" \
         -i "pandas.arrays.ArrowExtensionArray PR07,SA01" \
-        -i "pandas.arrays.DatetimeArray SA01" \
         -i "pandas.arrays.IntegerArray SA01" \
         -i "pandas.arrays.IntervalArray.left SA01" \
         -i "pandas.arrays.IntervalArray.length SA01" \
@@ -128,8 +98,6 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.arrays.SparseArray PR07,SA01" \
         -i "pandas.arrays.TimedeltaArray PR07,SA01" \
         -i "pandas.core.groupby.DataFrameGroupBy.__iter__ RT03,SA01" \
-        -i "pandas.core.groupby.DataFrameGroupBy.agg RT03" \
-        -i "pandas.core.groupby.DataFrameGroupBy.aggregate RT03" \
         -i "pandas.core.groupby.DataFrameGroupBy.boxplot PR07,RT03,SA01" \
         -i "pandas.core.groupby.DataFrameGroupBy.get_group RT03,SA01" \
         -i "pandas.core.groupby.DataFrameGroupBy.groups SA01" \
@@ -140,8 +108,6 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.core.groupby.DataFrameGroupBy.plot PR02" \
         -i "pandas.core.groupby.DataFrameGroupBy.sem SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.__iter__ RT03,SA01" \
-        -i "pandas.core.groupby.SeriesGroupBy.agg RT03" \
-        -i "pandas.core.groupby.SeriesGroupBy.aggregate RT03" \
         -i "pandas.core.groupby.SeriesGroupBy.get_group RT03,SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.groups SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.indices SA01" \
@@ -168,42 +134,30 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.core.resample.Resampler.var SA01" \
         -i "pandas.errors.AttributeConflictWarning SA01" \
         -i "pandas.errors.CSSWarning SA01" \
-        -i "pandas.errors.CategoricalConversionWarning SA01" \
         -i "pandas.errors.ChainedAssignmentError SA01" \
-        -i "pandas.errors.ClosedFileError SA01" \
         -i "pandas.errors.DataError SA01" \
         -i "pandas.errors.DuplicateLabelError SA01" \
-        -i "pandas.errors.EmptyDataError SA01" \
         -i "pandas.errors.IntCastingNaNError SA01" \
         -i "pandas.errors.InvalidIndexError SA01" \
-        -i "pandas.errors.InvalidVersion SA01" \
         -i "pandas.errors.NullFrequencyError SA01" \
         -i "pandas.errors.NumExprClobberingError SA01" \
         -i "pandas.errors.NumbaUtilError SA01" \
         -i "pandas.errors.OptionError SA01" \
-        -i "pandas.errors.OutOfBoundsDatetime SA01" \
         -i "pandas.errors.OutOfBoundsTimedelta SA01" \
         -i "pandas.errors.PerformanceWarning SA01" \
         -i "pandas.errors.PossibleDataLossError SA01" \
         -i "pandas.errors.PossiblePrecisionLoss SA01" \
-        -i "pandas.errors.SpecificationError SA01" \
         -i "pandas.errors.UndefinedVariableError PR01,SA01" \
         -i "pandas.errors.UnsortedIndexError SA01" \
         -i "pandas.errors.UnsupportedFunctionCall SA01" \
         -i "pandas.errors.ValueLabelTypeMismatch SA01" \
         -i "pandas.infer_freq SA01" \
         -i "pandas.io.json.build_table_schema PR07,RT03,SA01" \
-        -i "pandas.io.stata.StataReader.data_label SA01" \
-        -i "pandas.io.stata.StataReader.value_labels RT03,SA01" \
-        -i "pandas.io.stata.StataReader.variable_labels RT03,SA01" \
         -i "pandas.io.stata.StataWriter.write_file SA01" \
         -i "pandas.json_normalize RT03,SA01" \
-        -i "pandas.period_range RT03,SA01" \
         -i "pandas.plotting.andrews_curves RT03,SA01" \
-        -i "pandas.plotting.lag_plot RT03,SA01" \
         -i "pandas.plotting.scatter_matrix PR07,SA01" \
         -i "pandas.set_eng_float_format RT03,SA01" \
-        -i "pandas.testing.assert_extension_array_equal SA01" \
         -i "pandas.tseries.offsets.BDay PR02,SA01" \
         -i "pandas.tseries.offsets.BQuarterBegin.is_on_offset GL08" \
         -i "pandas.tseries.offsets.BQuarterBegin.n GL08" \

doc/source/development/contributing.rst

@@ -305,15 +305,15 @@ It is important to periodically update your local ``main`` branch with updates f
 branch and update your development environment to reflect any changes to the various packages that
 are used during development.
 
-If using :ref:`mamba <contributing.mamba>`, run:
+If using :ref:`conda <contributing.conda>`, run:
 
 .. code-block:: shell
 
     git checkout main
     git fetch upstream
     git merge upstream/main
-    mamba activate pandas-dev
-    mamba env update -f environment.yml --prune
+    conda activate pandas-dev
+    conda env update -f environment.yml --prune
 
 If using :ref:`pip <contributing.pip>` , do:
 

doc/source/development/contributing_codebase.rst

@@ -244,7 +244,7 @@ in your python environment.
 
 .. warning::
 
-    * Please be aware that the above commands will use the current python environment. If your python packages are older/newer than those installed by the pandas CI, the above commands might fail. This is often the case when the ``mypy`` or ``numpy`` versions do not match. Please see :ref:`how to setup the python environment <contributing.mamba>` or select a `recently succeeded workflow <https://github.com/pandas-dev/pandas/actions/workflows/code-checks.yml?query=branch%3Amain+is%3Asuccess>`_, select the "Docstring validation, typing, and other manual pre-commit hooks" job, then click on "Set up Conda" and "Environment info" to see which versions the pandas CI installs.
+    * Please be aware that the above commands will use the current python environment. If your python packages are older/newer than those installed by the pandas CI, the above commands might fail. This is often the case when the ``mypy`` or ``numpy`` versions do not match. Please see :ref:`how to setup the python environment <contributing.conda>` or select a `recently succeeded workflow <https://github.com/pandas-dev/pandas/actions/workflows/code-checks.yml?query=branch%3Amain+is%3Asuccess>`_, select the "Docstring validation, typing, and other manual pre-commit hooks" job, then click on "Set up Conda" and "Environment info" to see which versions the pandas CI installs.
 
 .. _contributing.ci: