Merge remote-tracking branch 'upstream/main' into string-dtype-tests-remove-usage-pyarrow_numpy-alias

Author: jorisvandenbossche

.github/workflows/unit-tests.yml

@@ -380,7 +380,7 @@ jobs:
           fetch-depth: 0
 
       - name: Set up Python Free-threading Version
-        uses: deadsnakes/action@v3.1.0
+        uses: deadsnakes/action@v3.2.0
         with:
           python-version: 3.13-dev
           nogil: true

ci/code_checks.sh

@@ -75,9 +75,7 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.Period.ordinal GL08" \
         -i "pandas.PeriodDtype.freq SA01" \
         -i "pandas.RangeIndex.from_range PR01,SA01" \
-        -i "pandas.RangeIndex.start SA01" \
         -i "pandas.RangeIndex.step SA01" \
-        -i "pandas.RangeIndex.stop SA01" \
         -i "pandas.Series.cat.add_categories PR01,PR02" \
         -i "pandas.Series.cat.as_ordered PR01" \
         -i "pandas.Series.cat.as_unordered PR01" \
@@ -92,10 +90,8 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.Series.dt.floor PR01,PR02" \
         -i "pandas.Series.dt.freq GL08" \
         -i "pandas.Series.dt.month_name PR01,PR02" \
-        -i "pandas.Series.dt.nanoseconds SA01" \
         -i "pandas.Series.dt.normalize PR01" \
         -i "pandas.Series.dt.round PR01,PR02" \
-        -i "pandas.Series.dt.seconds SA01" \
         -i "pandas.Series.dt.strftime PR01,PR02" \
         -i "pandas.Series.dt.to_period PR01,PR02" \
         -i "pandas.Series.dt.total_seconds PR01" \
@@ -113,8 +109,6 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.Timedelta.resolution PR02" \
         -i "pandas.Timedelta.to_timedelta64 SA01" \
         -i "pandas.Timedelta.total_seconds SA01" \
-        -i "pandas.TimedeltaIndex.nanoseconds SA01" \
-        -i "pandas.TimedeltaIndex.seconds SA01" \
         -i "pandas.TimedeltaIndex.to_pytimedelta RT03,SA01" \
         -i "pandas.Timestamp.max PR02" \
         -i "pandas.Timestamp.min PR02" \
@@ -123,13 +117,6 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.Timestamp.tzinfo GL08" \
         -i "pandas.Timestamp.year GL08" \
         -i "pandas.api.extensions.ExtensionArray.interpolate PR01,SA01" \
-        -i "pandas.api.types.is_bool PR01,SA01" \
-        -i "pandas.api.types.is_categorical_dtype SA01" \
-        -i "pandas.api.types.is_complex PR01,SA01" \
-        -i "pandas.api.types.is_complex_dtype SA01" \
-        -i "pandas.api.types.is_datetime64_dtype SA01" \
-        -i "pandas.api.types.is_datetime64_ns_dtype SA01" \
-        -i "pandas.api.types.is_datetime64tz_dtype SA01" \
         -i "pandas.api.types.is_dict_like PR07,SA01" \
         -i "pandas.api.types.is_extension_array_dtype SA01" \
         -i "pandas.api.types.is_file_like PR07,SA01" \
@@ -163,7 +150,6 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.core.groupby.DataFrameGroupBy.agg RT03" \
         -i "pandas.core.groupby.DataFrameGroupBy.aggregate RT03" \
         -i "pandas.core.groupby.DataFrameGroupBy.boxplot PR07,RT03,SA01" \
-        -i "pandas.core.groupby.DataFrameGroupBy.filter SA01" \
         -i "pandas.core.groupby.DataFrameGroupBy.get_group RT03,SA01" \
         -i "pandas.core.groupby.DataFrameGroupBy.groups SA01" \
         -i "pandas.core.groupby.DataFrameGroupBy.hist RT03" \
@@ -179,7 +165,6 @@ if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
         -i "pandas.core.groupby.SeriesGroupBy.__iter__ RT03,SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.agg RT03" \
         -i "pandas.core.groupby.SeriesGroupBy.aggregate RT03" \
-        -i "pandas.core.groupby.SeriesGroupBy.filter PR01,SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.get_group RT03,SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.groups SA01" \
         -i "pandas.core.groupby.SeriesGroupBy.indices SA01" \

pandas/_libs/lib.pyx

@@ -1123,10 +1123,21 @@ def is_bool(obj: object) -> bool:
     """
     Return True if given object is boolean.
 
+    Parameters
+    ----------
+    obj : object
+        Object to check.
+
     Returns
     -------
     bool
 
+    See Also
+    --------
+    api.types.is_scalar : Check if the input is a scalar.
+    api.types.is_integer : Check if the input is an integer.
+    api.types.is_float : Check if the input is a float.
+
     Examples
     --------
     >>> pd.api.types.is_bool(True)
@@ -1142,10 +1153,22 @@ def is_complex(obj: object) -> bool:
     """
     Return True if given object is complex.
 
+    Parameters
+    ----------
+    obj : object
+        Object to check.
+
     Returns
     -------
     bool
 
+    See Also
+    --------
+    api.types.is_complex_dtype: Check whether the provided array or
+                                dtype is of a complex dtype.
+    api.types.is_number: Check if the object is a number.
+    api.types.is_integer: Return True if given object is integer.
+
     Examples
     --------
     >>> pd.api.types.is_complex(1 + 1j)

pandas/core/arrays/string_.py

@@ -715,6 +715,10 @@ def __setitem__(self, key, value) -> None:
         else:
             if not is_array_like(value):
                 value = np.asarray(value, dtype=object)
+            else:
+                # cast categories and friends to arrays to see if values are
+                # compatible, compatibility with arrow backed strings
+                value = np.asarray(value)
             if len(value) and not lib.is_string_array(value, skipna=True):
                 raise TypeError("Must provide strings.")
 

pandas/core/arrays/string_arrow.py

@@ -240,7 +240,7 @@ def _maybe_convert_setitem_value(self, value):
             value[isna(value)] = None
             for v in value:
                 if not (v is None or isinstance(v, str)):
-                    raise TypeError("Scalar must be NA or str")
+                    raise TypeError("Must provide strings")
         return super()._maybe_convert_setitem_value(value)
 
     def isin(self, values: ArrayLike) -> npt.NDArray[np.bool_]:

pandas/core/arrays/timedeltas.py

@@ -842,6 +842,11 @@ def to_pytimedelta(self) -> npt.NDArray[np.object_]:
     seconds_docstring = textwrap.dedent(
         """Number of seconds (>= 0 and less than 1 day) for each element.
 
+    See Also
+    --------
+    Series.dt.seconds : Return number of seconds for each element.
+    Series.dt.nanoseconds : Return number of nanoseconds for each element.
+
     Examples
     --------
     For Series:
@@ -917,6 +922,11 @@ def to_pytimedelta(self) -> npt.NDArray[np.object_]:
     nanoseconds_docstring = textwrap.dedent(
         """Number of nanoseconds (>= 0 and less than 1 microsecond) for each element.
 
+    See Also
+    --------
+    Series.dt.seconds : Return number of seconds for each element.
+    Series.dt.microseconds : Return number of nanoseconds for each element.
+
     Examples
     --------
     For Series:

pandas/core/construction.py

@@ -611,7 +611,10 @@ def sanitize_array(
                 dtype = StringDtype(na_value=np.nan)
                 subarr = dtype.construct_array_type()._from_sequence(data, dtype=dtype)
 
-            if subarr is data and copy:
+            if (
+                subarr is data
+                or (subarr.dtype == "str" and subarr.dtype.storage == "python")  # type: ignore[union-attr]
+            ) and copy:
                 subarr = subarr.copy()
 
         else:

pandas/core/dtypes/common.py

@@ -279,6 +279,13 @@ def is_datetime64_dtype(arr_or_dtype) -> bool:
     boolean
         Whether or not the array-like or dtype is of the datetime64 dtype.
 
+    See Also
+    --------
+    api.types.is_datetime64_ns_dtype: Check whether the provided array or
+                                        dtype is of the datetime64[ns] dtype.
+    api.types.is_datetime64_any_dtype: Check whether the provided array or
+                                        dtype is of the datetime64 dtype.
+
     Examples
     --------
     >>> from pandas.api.types import is_datetime64_dtype
@@ -316,6 +323,13 @@ def is_datetime64tz_dtype(arr_or_dtype) -> bool:
     boolean
         Whether or not the array-like or dtype is of a DatetimeTZDtype dtype.
 
+    See Also
+    --------
+    api.types.is_datetime64_dtype: Check whether an array-like or
+                                        dtype is of the datetime64 dtype.
+    api.types.is_datetime64_any_dtype: Check whether the provided array or
+                                        dtype is of the datetime64 dtype.
+
     Examples
     --------
     >>> from pandas.api.types import is_datetime64tz_dtype
@@ -514,6 +528,12 @@ def is_categorical_dtype(arr_or_dtype) -> bool:
     boolean
         Whether or not the array-like or dtype is of the Categorical dtype.
 
+    See Also
+    --------
+    api.types.is_list_like: Check if the object is list-like.
+    api.types.is_complex_dtype: Check whether the provided array or
+                                dtype is of a complex dtype.
+
     Examples
     --------
     >>> from pandas.api.types import is_categorical_dtype
@@ -977,6 +997,13 @@ def is_datetime64_ns_dtype(arr_or_dtype) -> bool:
     bool
         Whether or not the array or dtype is of the datetime64[ns] dtype.
 
+    See Also
+    --------
+    api.types.is_datetime64_dtype: Check whether an array-like or
+                                        dtype is of the datetime64 dtype.
+    api.types.is_datetime64_any_dtype: Check whether the provided array or
+                                        dtype is of the datetime64 dtype.
+
     Examples
     --------
     >>> from pandas.api.types import is_datetime64_ns_dtype
@@ -1436,6 +1463,14 @@ def is_complex_dtype(arr_or_dtype) -> bool:
     boolean
         Whether or not the array or dtype is of a complex dtype.
 
+    See Also
+    --------
+    api.types.is_complex: Return True if given object is complex.
+    api.types.is_numeric_dtype: Check whether the provided array or
+                                dtype is of a numeric dtype.
+    api.types.is_integer_dtype: Check whether the provided array or
+                                dtype is of an integer dtype.
+
     Examples
     --------
     >>> from pandas.api.types import is_complex_dtype

pandas/core/groupby/generic.py

@@ -600,15 +600,23 @@ def filter(self, func, dropna: bool = True, *args, **kwargs):
         ----------
         func : function
             Criterion to apply to each group. Should return True or False.
-        dropna : bool
+        dropna : bool, optional
             Drop groups that do not pass the filter. True by default; if False,
             groups that evaluate False are filled with NaNs.
+        *args : tuple
+            Optional positional arguments to pass to `func`.
+        **kwargs : dict
+            Optional keyword arguments to pass to `func`.
 
         Returns
         -------
         Series
             The filtered subset of the original Series.
 
+        See Also
+        --------
+        DataFrameGroupBy.filter : Filter elements from groups base on criterion.
+
         Notes
         -----
         Functions that mutate the passed object can produce unexpected
@@ -1943,16 +1951,20 @@ def filter(self, func, dropna: bool = True, *args, **kwargs) -> DataFrame:
         dropna : bool
             Drop groups that do not pass the filter. True by default; if False,
             groups that evaluate False are filled with NaNs.
-        *args
+        *args : tuple
             Additional positional arguments to pass to `func`.
-        **kwargs
+        **kwargs : dict
             Additional keyword arguments to pass to `func`.
 
         Returns
         -------
         DataFrame
             The filtered subset of the original DataFrame.
 
+        See Also
+        --------
+        SeriesGroupBy.filter : Filter elements from groups base on criterion.
+
         Notes
         -----
         Each subframe is endowed the attribute 'name' in case you need to know

pandas/core/indexes/base.py

@@ -504,7 +504,8 @@ def __new__(
 
         elif is_ea_or_datetimelike_dtype(dtype):
             # non-EA dtype indexes have special casting logic, so we punt here
-            pass
+            if isinstance(data, (set, frozenset)):
+                data = list(data)
 
         elif is_ea_or_datetimelike_dtype(data_dtype):
             pass
@@ -6877,6 +6878,9 @@ def insert(self, loc: int, item) -> Index:
             #  We cannot keep the same dtype, so cast to the (often object)
             #  minimal shared dtype before doing the insert.
             dtype = self._find_common_type_compat(item)
+            if dtype == self.dtype:
+                # EA's might run into recursion errors if loc is invalid
+                raise
             return self.astype(dtype).insert(loc, item)
 
         if arr.dtype != object or not isinstance(