README.md

The PB3 Lab Workshop GitHub

Institute for Biological and Medical Engineering (IIBM), Pontificia Universidad Catolica de Chile

ANID – Millennium Science Initiative Program – Millennium Institute for Integrative Biology (iBio)

Brief Introduction

This website contains several workshops on Computational Biology organized by our lab.

It might be updated frequently with updates and new tutorials.

Workshops

From (many) sequences to (many) structures: Metagenomics meets Protein Structure Prediction

October 10-12, 2022 - Universidade de São Paulo, Campus de São Carlos

Tutorial	Description
Day 1 - Tutorial 1	Metagenomic data processing, from reads to protein functions
Day 1 - Tutorial 2	Metagenomic data processing, from reads to protein functions
Day 2 - Tutorial 1	Phylogenetic Analysis and ASR
Day 2 - Tutorial 2	Coevolutionary Analysis of Protein Sequences using pyDCA
Day 2 - Tutorial 3	Coupling AF2 and GROMACS for protein structure prediction and MD simulations

SPB Workshop - Molecular Docking, AlphaFold2 and Molecular Dynamics

November 3 & 10, 2022 - Sociedad Peruana de Bioinformática y Biología Computacional

Tutorial	Description
Day 1 - Tutorial 1	Introduction to Google Colab + Visualizing Molecular Structures in Google Colab using py3Dmol
Day 1 - Tutorial 2	Molecular Docking on Google Colab with AutoDock Vina and QuickVina
Day 2 - Tutorial 1	Coupling AF2 and GROMACS for protein structure prediction and MD simulations