Fix directory path normalization

Author: peteretelej

package.json

@@ -1,6 +1,6 @@
 {
   "name": "directory-indexer",
-  "version": "0.0.14",
+  "version": "0.0.15",
   "description": "AI-powered directory indexing with semantic search for MCP servers",
   "main": "dist/cli.js",
   "bin": {

src/indexing.ts

@@ -177,7 +177,8 @@ export async function indexDirectories(paths: string[], config: Config): Promise
   for (const path of paths) {
     try {
       // Mark directory as indexing
-      await sqlite.upsertDirectory(path, 'indexing');
+      const normalizedPath = normalizePath(path);
+      await sqlite.upsertDirectory(normalizedPath, 'indexing');
 
       const files = await scanDirectory(path, scanOptions);
 
@@ -235,10 +236,11 @@ export async function indexDirectories(paths: string[], config: Config): Promise
       // Mark directory as completed if no errors for this directory
       const directoryErrors = errors.filter(err => err.includes(path));
       const directoryStatus = directoryErrors.length > 0 ? 'failed' : 'completed';
-      await sqlite.upsertDirectory(path, directoryStatus);
+      await sqlite.upsertDirectory(normalizedPath, directoryStatus);
 
     } catch (error) {
-      await sqlite.upsertDirectory(path, 'failed');
+      const normalizedPath = normalizePath(path);
+      await sqlite.upsertDirectory(normalizedPath, 'failed');
       errors.push(`Failed to scan directory ${path}: ${(error as Error).message}`);
     }
   }

src/storage.ts

@@ -455,7 +455,7 @@ export async function getIndexStatus(): Promise<IndexStatus> {
         COUNT(f.id) as files_count,
         COALESCE(SUM(json_array_length(f.chunks_json)), 0) as chunks_count
       FROM directories d
-      LEFT JOIN files f ON f.parent_dirs LIKE '%' || d.path || '%'
+      LEFT JOIN files f ON f.parent_dirs LIKE '%"' || d.path || '"%'
       GROUP BY d.id, d.path, d.status, d.indexed_at
       ORDER BY d.indexed_at DESC
     `);
@@ -464,7 +464,7 @@ export async function getIndexStatus(): Promise<IndexStatus> {
     const directories: DirectoryStatus[] = directoryDetails.map(row => {
       const errorsByDirStmt = sqlite.db.prepare(`
         SELECT errors_json FROM files 
-        WHERE parent_dirs LIKE '%' || ? || '%' AND errors_json IS NOT NULL
+        WHERE parent_dirs LIKE '%"' || ? || '"%' AND errors_json IS NOT NULL
       `);
       const dirErrors = errorsByDirStmt.all(row.path) as { errors_json: string }[];