Bioinformatics Pipeline Standards and Review Process

[kevinlibuit]

Creation of standards by which bioinformatics resources can be systematically assessed plus a review process defining the assessment criteria and procedure

[kevinlibuit]

Useful resources to get us started:

• Ten recommendations for creating useable bioinformatics command line software
• Existing Workflow Systems
• Workflow Execution Service (WES) API
• GA4GE Tool Execution Challenge
• bio.tools tool registry

[kevinlibuit]

More useful resources:

• JOSS review checklist
• How to write bioinformatic software no one will use
• Global coalition regulatory science research

[kapsakcj]

https://www.slideshare.net/torstenseemann/how-to-write-bioinformatics-software-no-one-will-use

https://www.nature.com/articles/s41591-020-0935-z

^ "Ten recommendations for supporting open pathogen genomic analysis in public health" - Allison Black, Duncan R. MacCannell, Thomas R. Sibley & Trevor Bedford