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Command line interface

Adrian Viehweger edited this page Mar 28, 2017 · 18 revisions
# at place A, create some json
zoo init file.json  # validation checks on records at this stage
# more modifications
zoo commit -m 'new RNA virus assemblies from study'
dat share . # generates link asdew3es...

# in some faraway place B
dat clone asdew3es...
zoo add --db zika --cell new_study 
# rename
zoo drop --db zika --cell new_study --force
zoo add --db zika --cell renamed_study
# now we can do analyses, e.g. MSA against some flaviviruses
zoo commit -m 'new RNA viruses related to flavivirus'

# at some place C, somebody already cloned zoo B
zoo pull # new sequences now present
zoo status --db zika

# This is lucky because B got frustrated and deleted evrything.
zoo destroy --db zika
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