[TRST-1.2-R1] Silent override of userdefined flags via alias --with-comet introduces configuration ambiguity

[0xHansLee]

Description and context

In client/cmd/cmd.go-72-85, the aliasWithComet function unconditionally sets the --with-comet flag to match the value of --with-tendermint if the latter is present. This logic does not verify whether --with-comet was already explicitly defined by the user. As a result, user-specified configurations such as --with-comet=false --with-tendermint=true will lead to --with-comet being silently overridden to true. This behavior risks violating user intent and could affect security-critical configurations that depend on these flags.

Suggested solution

We recommend checking if --with-comet has already been explicitly defined before overwriting it.