add pylint

Author: wyim-pgl

.github/workflows/pylint.yml

@@ -0,0 +1,44 @@
+name: Pylint
+
+on:
+  push:
+    branches: [ main, develop ]
+    paths:
+      - '**.py'
+      - '.github/workflows/pylint.yml'
+  pull_request:
+    branches: [ main ]
+    paths:
+      - '**.py'
+      - '.github/workflows/pylint.yml'
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11"]
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install pylint
+        # Install common dependencies used by the scripts
+        pip install pandas numpy scikit-learn biopython pysam
+
+    - name: Analysing the code with pylint
+      run: |
+        pylint $(find bin -name "*.py" -type f) \
+          --disable=C0114,C0115,C0116 \
+          --disable=R0913,R0914,R0915 \
+          --disable=W0612,W0613 \
+          --max-line-length=120 \
+          --exit-zero