Bug fix to deal with cases where line numbers don't exists in files that are being displayed in modals

Author: Gareth Aneurin Tribello

PlumedToHTML/PlumedFormatter.py

@@ -147,8 +147,10 @@ def format(self, tokensource, outfile):
                            for n, l in enumerate(self.auxinputlines) : 
                                bounds = l.split("-")
                                start, end = int( bounds[0] ), int( bounds[1] )
+                               if start>len(allines) : break
                                if n>0 : shortversion += "...\n"
-                               for kk in range(start,end+1) : shortversion += allines[kk-1] + "\n"
+                               for kk in range(start,end+1) : 
+                                   if kk<=len(allines) : shortversion += allines[kk-1] + "\n"
                            fcontent = shortversion
                         outfile.write('<div class="tooltip">' + inp + '<div class="right"> Click <a onclick=\'openModal("' + self.egname + inp + str(nfiles) + '")\'>here</a> to see an extract from this file.<i></i></div></div>')
                         outfile.write('<div id="' + self.egname + inp + str(nfiles) + '" class="modal">')

setup.py

@@ -6,7 +6,7 @@
 
 setuptools.setup(
      name='PlumedToHTML',  
-     version='0.91',
+     version='0.92',
      author="Gareth Tribello",
      author_email="[email protected]",
      description="A package for creating pretified HTML for PLUMED files",