Update Axum route definitions to new syntax

https://tokio.rs/blog/2025-01-01-announcing-axum-0-8-0
tokio-rs/axum#2645

Author: kimrutherford

Cargo.toml

@@ -33,7 +33,7 @@ rusqlite = { version = "0.32.1", features = ["bundled", "serde_json"] }
 tower = { version = "0.5", features = ["util"] }
 tower-http = { version = "0.6.2", features = ["fs", "normalize-path"] }
 axum = { version = "0.8", features = ["macros"] }
-axum-macros = "0.5.0"
+axum-macros = "0.5"
 http-body-util = "0.1.2"
 percent-encoding = "2.3.1"
 mime_guess = "2.0"

src/bin/pombase-server.rs

@@ -737,36 +737,36 @@ async fn main() {
 
     println!("Starting server ...");
     let app = Router::new()
-        .route("/*path", get(get_misc))
+        .route("/{*path}", get(get_misc))
         .route("/", get(get_index))
-        .route("/structure_view/:structure_type/:id", get(structure_view))
-        .route("/rna_2d_structure/:gene_uniquename/:urs_id", get(rna_2d_structure))
-        .route("/protein_feature_view/:scope/:gene_uniquename", get(protein_feature_view))
-        .route("/gocam_viz/:full_or_widget/:gocam_id", get(gocam_viz))
-        .route("/simple/gene/:id", get(get_simple_gene))
-        .route("/simple/genotype/:id", get(get_simple_genotype))
-        .route("/simple/reference/:id", get(get_simple_reference))
-        .route("/simple/term/:id", get(get_simple_term))
-        .route("/api/v1/dataset/latest/complete/allele/*q", get(allele_complete))
-        .route("/api/v1/dataset/latest/complete/ref/:q", get(ref_complete))
-        .route("/api/v1/dataset/latest/complete/term/:cv_name/:q", get(term_complete))
-        .route("/api/v1/dataset/latest/data/allele/:id", get(get_allele))
-        .route("/api/v1/dataset/latest/data/gene/:id", get(get_gene))
-        .route("/api/v1/dataset/latest/data/genotype/:id", get(get_genotype))
-        .route("/api/v1/dataset/latest/data/reference/:id", get(get_reference))
+        .route("/structure_view/{structure_type}/{id}", get(structure_view))
+        .route("/rna_2d_structure/{gene_uniquename}/{urs_id}", get(rna_2d_structure))
+        .route("/protein_feature_view/{scope}/{gene_uniquename}", get(protein_feature_view))
+        .route("/gocam_viz/{full_or_widget}/{gocam_id}", get(gocam_viz))
+        .route("/simple/gene/{id}", get(get_simple_gene))
+        .route("/simple/genotype/{id}", get(get_simple_genotype))
+        .route("/simple/reference/{id}", get(get_simple_reference))
+        .route("/simple/term/{id}", get(get_simple_term))
+        .route("/api/v1/dataset/latest/complete/allele/{*q}", get(allele_complete))
+        .route("/api/v1/dataset/latest/complete/ref/{q}", get(ref_complete))
+        .route("/api/v1/dataset/latest/complete/term/{cv_name}/{q}", get(term_complete))
+        .route("/api/v1/dataset/latest/data/allele/{id}", get(get_allele))
+        .route("/api/v1/dataset/latest/data/gene/{id}", get(get_gene))
+        .route("/api/v1/dataset/latest/data/genotype/{id}", get(get_genotype))
+        .route("/api/v1/dataset/latest/data/reference/{id}", get(get_reference))
         .route("/api/v1/dataset/latest/data/seq_feature_page_features", get(seq_feature_page_features))
-        .route("/api/v1/dataset/latest/data/term/:id", get(get_term))
-        .route("/api/v1/dataset/latest/data/gocam/:full_or_widget/:gene_uniquename", get(get_gocam_data))
+        .route("/api/v1/dataset/latest/data/term/{id}", get(get_term))
+        .route("/api/v1/dataset/latest/data/gocam/{full_or_widget}/{gene_uniquename}", get(get_gocam_data))
         .route("/api/v1/dataset/latest/data/gocam/all", get(get_all_gocam_data))
-        .route("/api/v1/dataset/latest/data/gocam/by_id/:gocam_id", get(get_all_gocam_data_by_id))
-        .route("/api/v1/dataset/latest/gene_ex_violin_plot/:plot_size/:genes", get(gene_ex_violin_plot))
-        .route("/api/v1/dataset/latest/stats/:type", get(get_stats))
-        .route("/api/v1/dataset/latest/motif_search/:scope/:q/:max_gene_details", get(motif_search))
-        .route("/api/v1/dataset/latest/protein_features/:scope/:gene_uniquename", get(get_protein_features))
-        .route("/api/v1/dataset/latest/query/:q", get(query_get))
+        .route("/api/v1/dataset/latest/data/gocam/by_id/{gocam_id}", get(get_all_gocam_data_by_id))
+        .route("/api/v1/dataset/latest/gene_ex_violin_plot/{plot_size}/{genes}", get(gene_ex_violin_plot))
+        .route("/api/v1/dataset/latest/stats/{type}", get(get_stats))
+        .route("/api/v1/dataset/latest/motif_search/{scope}/{q}/{max_gene_details}", get(motif_search))
+        .route("/api/v1/dataset/latest/protein_features/{scope}/{gene_uniquename}", get(get_protein_features))
+        .route("/api/v1/dataset/latest/query/{q}", get(query_get))
         .route("/api/v1/dataset/latest/query", post(query_post))
-        .route("/api/v1/dataset/latest/search/:scope/:q", get(solr_search))
-        .route("/api/v1/dataset/latest/summary/term/:id", get(get_term_summary_by_id))
+        .route("/api/v1/dataset/latest/search/{scope}/{q}", get(solr_search))
+        .route("/api/v1/dataset/latest/summary/term/{id}", get(get_term_summary_by_id))
         .route("/ping", get(ping))
         .fallback(not_found)
         .with_state(Arc::new(all_state));