diff --git a/packages/2025_Schuetz_Sarmatians/2025_Schuetz_Sarmatians.config b/packages/2025_Schuetz_Sarmatians/2025_Schuetz_Sarmatians.config new file mode 100644 index 0000000..bd778e1 --- /dev/null +++ b/packages/2025_Schuetz_Sarmatians/2025_Schuetz_Sarmatians.config @@ -0,0 +1,41 @@ +// Keep track of config versions +minotaur_release='1.0.0' // The release tag of the poseidon-eager repository used for processing and config file retrieval +config_template_version='1.0.0' +package_config_version='1.0.0' +minotaur_config_base="https://raw.githubusercontent.com/poseidon-framework/poseidon-eager/${minotaur_release}/conf" + +// This configuration file is designed to be a used with the nf-core/eager pipeline. +// Instead of having to specify all other configurations for the Minotaur pipeline +// on runtime, they are all contained in this file and loaded automatically upon +// specifying this config file during runtime. Additionally, any parameters that +// need to be altered from the defaults can be specified here. +// +// The intention is to make it easy for users to understand and reproduce the output +// from processing with the Minotaur workflow processing from the contents of a +// single file. + +// Load configuration profiles. They are loaded from the minotaur_config_base URL, main branch. +// The loaded config includes code that loads the institutional configs from https://github.com/poseidon-framework/minotaur-institutional-configs. +includeConfig "${minotaur_config_base}/Minotaur.config" // Default nf-core/eager parameters for Minotaur processing. + +// The following config file specifies BED files for on-target endogenous DNA calculation and mean coverage as well as pseudohaploid genotyping. +// TODO: Select the appropriate config for the CaptureType of the package. +includeConfig "${minotaur_config_base}/CaptureType_profiles/1240K.config" + +params { + // Keep track of config file versions used when processing + config_profile_description = "${config_profile_description}\n - config_template_version: ${config_template_version}\n - package_config_version: ${package_config_version}" + config_profile_contact = "Thiseas C. Lamnidis (@TCLamnidis)" + + /* + TODO: If you need to change any of the default processing parameters for this package + you can specify these parameters below. + Any parameters not specified in any of the config files default to their nf-core/eager default values. + + For information on all available parameters and their default values see: + https://nf-co.re/eager/2.5.1/parameters + + You can see the latest default values for parameters within poseidon-eager at: + https://github.com/poseidon-framework/poseidon-eager/blob/main/conf/Minotaur.config + */ +} diff --git a/packages/2025_Schuetz_Sarmatians/2025_Schuetz_Sarmatians.janno b/packages/2025_Schuetz_Sarmatians/2025_Schuetz_Sarmatians.janno new file mode 100644 index 0000000..d1b2c4b --- /dev/null +++ b/packages/2025_Schuetz_Sarmatians/2025_Schuetz_Sarmatians.janno @@ -0,0 +1,157 @@ +Poseidon_ID Genetic_Sex Group_Name Alternative_IDs Relation_To Relation_Degree Relation_Type Relation_Note Collection_ID Country Country_ISO Location Site Latitude Longitude Date_Type Date_C14_Labnr Date_C14_Uncal_BP Date_C14_Uncal_BP_Err Date_BC_AD_Start Date_BC_AD_Median Date_BC_AD_Stop Date_Note MT_Haplogroup Y_Haplogroup Source_Tissue Primary_Contact Note Keywords +ZZ-1 F Hungary_Sarmatian_Period ZZ-1 n/a n/a n/a n/a n/a Hungary HU Zákányszék Zákánydűlő NY/69 46.274831 19.889711 n/a n/a n/a n/a n/a n/a n/a n/a H3+152 n/a Bone_Pars petrosa +VIG-94-1 F Hungary_Hun_Period VIG-94-1 n/a n/a n/a n/a n/a Hungary HU Visegrád Gizellamajor 47.755938 18.935544 n/a n/a n/a n/a n/a n/a n/a n/a U4a2b n/a tooth +TRE-33 F Romania_Sarmatian_Period TRE-33 n/a n/a n/a n/a n/a Romania RO Trestiana (Vaslui county) Trestiana (Vaslui county) 46.192714 27.669684 n/a n/a n/a n/a n/a n/a n/a n/a K1a n/a Bone_Pars petrosa +TMA-9 M Hungary_Sarmatian_Period TMA-9 n/a n/a n/a n/a n/a Hungary HU Tápé Malajdok A 46.261083 20.19139 n/a n/a n/a n/a n/a n/a n/a n/a X2d1 R1b1a1b1b3a1a1 Bone_Pars petrosa +TMA-8 M Hungary_Sarmatian_Period TMA-8 n/a n/a n/a n/a n/a Hungary HU Tápé Malajdok A 46.261083 20.19139 n/a n/a n/a n/a n/a n/a n/a n/a H35 J2b2a1~ Bone_Pars petrosa +TMA-36 F Hungary_Sarmatian_Period TMA-36 n/a n/a n/a n/a n/a Hungary HU Tápé Malajdok A 46.261083 20.19139 n/a n/a n/a n/a n/a n/a n/a n/a U5b1+16189+@16192 n/a Bone_Pars petrosa +TMA-2 M Hungary_Sarmatian_Period TMA-2 n/a n/a n/a n/a n/a Hungary HU Tápé Malajdok A 46.261083 20.19139 n/a n/a n/a n/a n/a n/a n/a n/a N1a1a1a3 R1a1a1b2a2b2b~ Bone_Pars petrosa +TMA-10 M Hungary_Sarmatian_Period TMA-10 n/a n/a n/a n/a n/a Hungary HU Tápé Malajdok A 46.261083 20.19139 n/a n/a n/a n/a n/a n/a n/a n/a U8b1b R1a1a1b2a2a1d4~ Bone_Pars petrosa +TIV-9 M Hungary_Sarmatian_Period TIV-9 n/a n/a n/a n/a n/a Hungary HU Tiszavalk Tiszavalk 47.687075 20.749877 n/a n/a n/a n/a n/a n/a n/a n/a H R1a1a1b2a2b2b~ Bone_Pars petrosa +TIV-6 M Hungary_Sarmatian_Period TIV-6 n/a n/a n/a n/a n/a Hungary HU Tiszavalk Tiszavalk 47.687075 20.749877 n/a n/a n/a n/a n/a n/a n/a n/a X2e1a R1a1a1b1 Bone_Pars petrosa +TIV-17 M Hungary_Sarmatian_Period TIV-17 n/a n/a n/a n/a n/a Hungary HU Tiszavalk Tiszavalk 47.687075 20.749877 n/a n/a n/a n/a n/a n/a n/a n/a U5b1b1+@16192 E1b1b1a1b1a Bone_Pars petrosa +TIV-13 F Hungary_Sarmatian_Period TIV-13 n/a n/a n/a n/a n/a Hungary HU Tiszavalk Tiszavalk 47.687075 20.749877 n/a n/a n/a n/a n/a n/a n/a n/a K2a9 n/a Bone_Pars petrosa +TAR-196 M Romania_Sarmatian_Period TAR-196 n/a n/a n/a n/a n/a Romania RO Târgșor, 1960 (Prahova county) Târgșor, 1960 (Prahova county) 44.878341 25.920804 n/a n/a n/a n/a n/a n/a n/a n/a F1b1+@152 R1a1a1b2a2a1d1~ Bone_Pars petrosa +TAR-184 F Romania_Sarmatian_Period TAR-184 n/a n/a n/a n/a n/a Romania RO Târgșor, 1960 (Prahova county) Târgșor, 1960 (Prahova county) 44.878341 25.920804 n/a n/a n/a n/a n/a n/a n/a n/a W3a1 n/a tooth +TAR-118 M Romania_Sarmatian_Period TAR-118 n/a n/a n/a n/a n/a Romania RO Târgșor, 1960 (Prahova county) Târgșor, 1960 (Prahova county) 44.878341 25.920804 n/a n/a n/a n/a n/a n/a n/a n/a HV18 R1b1a1a Bone_Pars petrosa +TAF-11 M Romania_Sarmatian_Period TAF-11 n/a n/a n/a n/a n/a Romania RO Târgu Frumos (Iași county) Târgu Frumos (Iași county) 47.207415 27.010622 n/a n/a n/a n/a n/a n/a n/a n/a U4b1a1a1 R1a1a1b2a2a1d6~ Bone_Pars petrosa +SPT-23 F Hungary_Sarmatian_Period SPT-23 n/a n/a n/a n/a n/a Hungary HU Szihalom Pamlényi tábla 47.773443 20.483088 n/a n/a n/a n/a n/a n/a n/a n/a H7a1 n/a Bone_Pars petrosa +SPF-1 F Hungary_Hun_Period SPF-1 n/a n/a n/a n/a n/a Hungary HU Solt Polya-fok 46.790933 19.005315 n/a n/a n/a n/a n/a n/a n/a n/a HV+16311 n/a Bone_Pars petrosa +RLS-1 F Romania_Sarmatian_Period RLS-1 n/a n/a n/a n/a n/a Romania RO Ripiceni La Stâncă (Botoșani county) 47.947014 27.140954 n/a n/a n/a n/a n/a n/a n/a n/a T1a1 n/a Bone_Pars petrosa +RBR-118 M Hungary_Sarmatian_Period RBR-118 n/a n/a n/a n/a n/a Hungary HU Rákóczifalva Bivaly-tó, Rokkant-föld II. 4. lh. 47.068372 20.187904 n/a n/a n/a n/a n/a n/a n/a n/a K1a1b1e R1b1a1b1b3a1a1 Bone_Pars petrosa +RAM-7 F Romania_Iron_Age RAM-7 n/a n/a n/a n/a n/a Romania RO Râmnicelu, 1969 (Brăila county) Râmnicelu, 1969 (Brăila county) 45.277092 27.548598 n/a n/a n/a n/a n/a n/a n/a n/a HV n/a tooth +RAM-13 M Romania_Sarmatian_Period RAM-13 n/a n/a n/a n/a n/a Romania RO Râmnicelu, 1969 (Brăila county) Râmnicelu, 1969 (Brăila county) 45.277092 27.548598 n/a n/a n/a n/a n/a n/a n/a n/a R0a2 I2a1a2b1a1 tooth +PRO-47 F Romania_Sarmatian_Period PRO-47 n/a n/a n/a n/a n/a Romania RO Probota (Iași county) Probota (Iași county) 47.37666 26.624634 n/a n/a n/a n/a n/a n/a n/a n/a H5b3 n/a tooth +PRO-37 F Romania_Sarmatian_Period PRO-37 n/a n/a n/a n/a n/a Romania RO Probota (Iași county) Probota (Iași county) 47.37666 26.624634 n/a n/a n/a n/a n/a n/a n/a n/a H101 n/a Bone_Pars petrosa +POG-10 M Romania_Sarmatian_Period POG-10 n/a n/a n/a n/a n/a Romania RO Pogorăști (Botoșani county) Pogorăști (Botoșani county) 47.579133 27.225294 n/a n/a n/a n/a n/a n/a n/a n/a T1a1 R1b1a1a1 tooth +PLG-5 M Hungary_Sarmatian_Period PLG-5 n/a n/a n/a n/a n/a Hungary HU Püspökladány Görepart 47.312748 21.091427 n/a n/a n/a n/a n/a n/a n/a n/a H6a1b I2a1b1a2a1b~ Bone_Pars petrosa +PLG-4 M Hungary_Sarmatian_Period PLG-4 n/a n/a n/a n/a n/a Hungary HU Püspökladány Görepart 47.312748 21.091427 n/a n/a n/a n/a n/a n/a n/a n/a H6a1b R1b1a1b1a1a2a1a tooth +PLG-1 M Hungary_Sarmatian_Period PLG-1 n/a n/a n/a n/a n/a Hungary HU Püspökladány Görepart 47.312748 21.091427 n/a n/a n/a n/a n/a n/a n/a n/a H1c3 J2b2a1a1a1a1a1a~ Bone_Pars petrosa +OSU-1 F Romania_Sarmatian_Period OSU-1 n/a n/a n/a n/a n/a Romania RO Olteniță Secția Ulmeni, 1960 (Călărași county) 44.091078 26.639557 n/a n/a n/a n/a n/a n/a n/a n/a H15a1a n/a tooth +OLR-2 M Romania_Sarmatian_Period OLR-2 n/a n/a n/a n/a n/a Romania RO Olteniță Renie, 1968 (Călărași county) 44.091078 26.639557 n/a n/a n/a n/a n/a n/a n/a n/a H8b1 J2a2~ tooth +NKT-32 M Hungary_Sarmatian_Period NKT-32 n/a n/a n/a n/a n/a Hungary HU Nemesnádudvar Külbogyiszló, Túzok-hát 46.314831 19.047464 n/a n/a n/a n/a n/a n/a n/a n/a X2b+226 R1b1a1b1a1a1c2b1a1b tooth +NKT-20 F Hungary_Sarmatian_Period NKT-20 n/a n/a n/a n/a n/a Hungary HU Nemesnádudvar Külbogyiszló, Túzok-hát 46.314831 19.047464 n/a n/a n/a n/a n/a n/a n/a n/a H3g1 n/a Bone_Pars petrosa +NKL-899 F Hungary_Hun_Period NKLper899 n/a n/a n/a n/a n/a Hungary HU Nagykálló Kis Ludas-tó dűlő 47.87549 21.84658 n/a n/a n/a n/a n/a n/a n/a n/a H35a n/a Bone_Pars petrosa +NKL-7 M Hungary_Sarmatian_Period NKLper7 n/a n/a n/a n/a n/a Hungary HU Nagykálló Kis Ludas-tó dűlő 47.87549 21.84658 n/a n/a n/a n/a n/a n/a n/a n/a X2b+226 R1a1a1b1a1a1c1c1a1~ Bone_Pars petrosa +NKL-157 F Hungary_Sarmatian_Period NKLper157 n/a n/a n/a n/a n/a Hungary HU Nagykálló Kis Ludas-tó dűlő 47.87549 21.84658 n/a n/a n/a n/a n/a n/a n/a n/a H5a1 n/a Bone_Pars petrosa +NKL-135 F Hungary_Sarmatian_Period NKLper135 n/a n/a n/a n/a n/a Hungary HU Nagykálló Kis Ludas-tó dűlő 47.87549 21.84658 n/a n/a n/a n/a n/a n/a n/a n/a HV0a n/a Bone_Pars petrosa +NKL-112 F Hungary_Sarmatian_Period NKLper112 n/a n/a n/a n/a n/a Hungary HU Nagykálló Kis Ludas-tó dűlő 47.87549 21.84658 n/a n/a n/a n/a n/a n/a n/a n/a T1a1 n/a Bone_Pars petrosa +MM2-245 F Hungary_Sarmatian_Period MM2-245 n/a n/a n/a n/a n/a Hungary HU Makó Mikócsa dűlő M43, 31. lh. 46.21654 20.516732 n/a n/a n/a n/a n/a n/a n/a n/a HV n/a tooth +MM2-215 F Hungary_Sarmatian_Period MM2-215 n/a n/a n/a n/a n/a Hungary HU Makó Mikócsa dűlő M43, 31. lh. 46.21654 20.516732 n/a n/a n/a n/a n/a n/a n/a n/a HV0+195 n/a Bone_Pars petrosa +MIJ-7 F Hungary_Sarmatian_Period MIJper7 n/a n/a n/a n/a n/a Hungary HU Makó Igási Járandó 46.28017 20.549259 n/a n/a n/a n/a n/a n/a n/a n/a U5a1b n/a tooth +MIJ-4 F Hungary_Sarmatian_Period MIJper4 n/a n/a n/a n/a n/a Hungary HU Makó Igási Járandó 46.28017 20.549259 n/a n/a n/a n/a n/a n/a n/a n/a H2a2b n/a tooth +MIJ-3 M Hungary_Sarmatian_Period MIJper3 n/a n/a n/a n/a n/a Hungary HU Makó Igási Járandó 46.28017 20.549259 n/a n/a n/a n/a n/a n/a n/a n/a Y1a E1b1b1a1b1~ tooth +MIJ-1 M Hungary_Sarmatian_Period MIJper1 n/a n/a n/a n/a n/a Hungary HU Makó Igási Járandó 46.28017 20.549259 n/a n/a n/a n/a n/a n/a n/a n/a H2a2b R1b1a1b1a1a2e2~ tooth +MEM-2 M Hungary_Hun_Period MEMper7 n/a n/a n/a n/a n/a Hungary HU Mezőkövesd Mocsolyás 47.809861 20.570944 n/a n/a n/a n/a n/a n/a n/a n/a U3a1 R1b1a1b1a1a2d Bone_Pars petrosa +MEH-2p F Hungary_Sarmatian_Period MEH-2p n/a n/a n/a n/a n/a Hungary HU Mezőcsát Hörcsögös 47.821483 20.903566 n/a n/a n/a n/a n/a n/a n/a n/a K1a4d n/a tooth +MDH-84 F Hungary_Sarmatian_Period MDH-84 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a U4a2 n/a Bone_Pars petrosa +MDH-82 M Hungary_Sarmatian_Period MDH-82 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a T2a1a R1a1a1b1a1~ tooth +MDH-661 M Hungary_Sarmatian_Period MDH-661 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a U5b1b1+@16192 R1a1a1b2a2b2b2~ Bone_Pars petrosa +MDH-656 F Hungary_Sarmatian_Period MDH-656 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a T2+16189 n/a Bone_Pars petrosa +MDH-630 M Hungary_Sarmatian_Period MDH-630 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a U5b1b1+@16192 G2a2b1a1b2a1a2~ Bone_Pars petrosa +MDH-592 M Hungary_Sarmatian_Period MDH-592 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a T2b I2a1b1a2a1a1~ tooth +MDH-514 M Hungary_Sarmatian_Period MDH-514 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a H5r I2a1b1a1b1a1a1a Bone_Pars petrosa +MDH-500 F Hungary_Sarmatian_Period MDH-500 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a U5b2b1b n/a Bone_Pars petrosa +MDH-483 F Hungary_Sarmatian_Period MDH-483 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a X2c1 n/a Bone_Pars petrosa +MDH-48 M Hungary_Sarmatian_Period MDH-48 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a H2a2b1 R1a1a1b2a2b2~ Bone_Pars petrosa +MDH-462 M Hungary_Sarmatian_Period MDH-462 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a W3a1 E1b1b1a1b1 Bone_Pars petrosa +MDH-444 M Hungary_Sarmatian_Period MDH-444 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a H5 E1b1b1a1b1 Bone_Pars petrosa +MDH-410 F Hungary_Sarmatian_Period MDH-410 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a HV+16311 n/a Bone_Pars petrosa +MDH-405 M Hungary_Sarmatian_Period MDH-405 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a T2c1a inconclusive Bone_Pars petrosa +MDH-357 M Hungary_Sarmatian_Period MDH-357 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a X2d R1a1a1b2a2a1d6~ tooth +MDH-344 F Hungary_Sarmatian_Period MDH-344 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a H6a1a n/a tooth +MDH-291 F Hungary_Sarmatian_Period MDH-291 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a T2b n/a Bone_Pars petrosa +MDH-28 M Hungary_Sarmatian_Period MDH-28 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a T1a1 J1a2b1b1~ Bone_Pars petrosa +MDH-265 M Hungary_Sarmatian_Period MDH-265 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a H10e1 R1a1a1b2a2b2b1~ tooth +MDH-263 M Hungary_Sarmatian_Period MDH-263 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a HV9 R1a1a1b2a2b2b~ Bone_Pars petrosa +MDH-249 M Hungary_Sarmatian_Period MDH-249 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a U8a R1a1a1b1~ tooth +MDH-221 F Hungary_Sarmatian_Period MDH-221 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a H2a1 n/a Bone_Pars petrosa +MDH-209 F Hungary_Sarmatian_Period MDHper209 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a H36 n/a Bone_Pars petrosa +MDH-188 F Hungary_Sarmatian_Period MDH-188 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a H4a n/a Bone_Pars petrosa +MDH-178 M Hungary_Sarmatian_Period MDH-178 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a H+152 R1a1a1b2a2b2b~ Bone_Pars petrosa +MDH-162 F Hungary_Sarmatian_Period MDHper162 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a T2+16189 n/a Bone_Pars petrosa +LMO-8 M Romania_Iron_Age LMO-8 n/a n/a n/a n/a n/a Romania RO Lișcoteanca Movila Olarului (Brăila county) 45.004203 27.552504 n/a n/a n/a n/a n/a n/a n/a n/a U7b R1a1a1b2a2a~ tooth +LMF-7 M Romania_Sarmatian_Period LMF-7 n/a n/a n/a n/a n/a Romania RO Lișcoteanca Moș Filon (Brăila county) 45.004203 27.552504 n/a n/a n/a n/a n/a n/a n/a n/a H8b1 R1a1a1b2a2a3a~ tooth +LMF-6 F Romania_Sarmatian_Period LMF-6 n/a n/a n/a n/a n/a Romania RO Lișcoteanca Moș Filon (Brăila county) 45.004203 27.552504 n/a n/a n/a n/a n/a n/a n/a n/a HV0+195 n/a tooth +KSZN-10321 M Hungary_Sarmatian_Period KSZN-10321 n/a n/a n/a n/a n/a Hungary HU Kunszentmiklós Nyakvágócsárda 46.97354 19.143353 n/a n/a n/a n/a n/a n/a n/a n/a U4a2 R1b1a1b1a1a2b1c tooth +KM-3679 M Hungary_Sarmatian_Period KM-3679 n/a n/a n/a n/a n/a Hungary HU Kecskemét Mindszenti-dűlő I, Mercedes RL 11 46.867396 19.712997 n/a n/a n/a n/a n/a n/a n/a n/a H7b1 I1a2a1a1a1b Bone_Pars petrosa +KFH-3 F Hungary_Sarmatian_Period KFH-3 n/a n/a n/a n/a n/a Hungary HU Kiskőrös Fekete halom 46.608256 19.320304 n/a n/a n/a n/a n/a n/a n/a n/a H5b5 n/a Bone_Pars petrosa +KFH-2 M Hungary_Sarmatian_Period KFH-2 n/a n/a n/a n/a n/a Hungary HU Kiskőrös Fekete halom 46.608256 19.320304 n/a n/a n/a n/a n/a n/a n/a n/a U4a1a R1b1a1b1a1a2c1d Bone_Pars petrosa +KAK-3 F Hungary_Sarmatian_Period KAK-3 n/a n/a n/a n/a n/a Hungary HU Kunadacs Községi temető 46.958434 19.28205 n/a n/a n/a n/a n/a n/a n/a n/a K1a4c1 n/a Bone_Pars petrosa +HVF-8 F Hungary_Sarmatian_Period HVF-8 n/a n/a n/a n/a n/a Hungary HU Hódmezővásárhely Fehértó 46.414948 20.324316 n/a n/a n/a n/a n/a n/a n/a n/a H6a1a4 n/a Bone_Pars petrosa +HVF-4 M Hungary_Sarmatian_Period HVFTper4SZgo n/a n/a n/a n/a n/a Hungary HU Hódmezővásárhely Fehértó 46.414948 20.324316 n/a n/a n/a n/a n/a n/a n/a n/a H5a5 R1a1a1b1a2b~ Bone_Pars petrosa +HVF-3 F Hungary_Sarmatian_Period HVFTper3SZpre n/a n/a n/a n/a n/a Hungary HU Hódmezővásárhely Fehértó 46.414948 20.324316 n/a n/a n/a n/a n/a n/a n/a n/a H55 n/a Bone_Pars petrosa +HVF-21 M Hungary_Sarmatian_Period HVF-21 n/a n/a n/a n/a n/a Hungary HU Hódmezővásárhely Fehértó 46.414948 20.324316 n/a n/a n/a n/a n/a n/a n/a n/a U5a2b1a R1a1a1b1a2b3a1a1a2~ tooth +HVF-2 F Hungary_Sarmatian_Period HVFTper2SZpre n/a n/a n/a n/a n/a Hungary HU Hódmezővásárhely Fehértó 46.414948 20.324316 n/a n/a n/a n/a n/a n/a n/a n/a J1c5 n/a Bone_Pars petrosa +HVF-17 M Hungary_Sarmatian_Period HVF-17 n/a n/a n/a n/a n/a Hungary HU Hódmezővásárhely Fehértó 46.414948 20.324316 n/a n/a n/a n/a n/a n/a n/a n/a H1+16239 R1a1a1b2a2b2b2~ Bone_Pars petrosa +HVF-15 F Hungary_Sarmatian_Period HVFTper15SZpre n/a n/a n/a n/a n/a Hungary HU Hódmezővásárhely Fehértó 46.414948 20.324316 n/a n/a n/a n/a n/a n/a n/a n/a U1a1a n/a Bone_Pars petrosa +HVF-10 F Hungary_Sarmatian_Period HVFTper10go n/a n/a n/a n/a n/a Hungary HU Hódmezővásárhely Fehértó 46.414948 20.324316 n/a n/a n/a n/a n/a n/a n/a n/a U4a3a n/a Bone_Pars petrosa +HKB-309 M Hungary_Sarmatian_Period HKB-309 n/a n/a n/a n/a n/a Hungary HU Hódmezővásárhely Kenyere-ér, Bereczki-tanya II. 46.453122 20.322687 n/a n/a n/a n/a n/a n/a n/a n/a U5a1a1 R1b1a1a2 tooth +HGY-14 F Hungary_Sarmatian_Period HGY-14 n/a n/a n/a n/a n/a Hungary HU Hévízgyörk Hévízgyörk 47.629408 19.519288 n/a n/a n/a n/a n/a n/a n/a n/a U4a1a n/a tooth +FKD-60 F Hungary_Sarmatian_Period FKD-60 n/a n/a n/a n/a n/a Hungary HU Füzesabony Kastélydűlő 47.750507 20.416176 n/a n/a n/a n/a n/a n/a n/a n/a J1c3 n/a Bone_Pars petrosa +FKD-150 F Hungary_Sarmatian_Period FKD-150 n/a n/a n/a n/a n/a Hungary HU Füzesabony Kastélydűlő 47.750507 20.416176 n/a n/a n/a n/a n/a n/a n/a n/a H101 n/a Bone_Pars petrosa +FKD-140 F Hungary_Sarmatian_Period FKD-140 n/a n/a n/a n/a n/a Hungary HU Füzesabony Kastélydűlő 47.750507 20.416176 n/a n/a n/a n/a n/a n/a n/a n/a H2a1 n/a Bone_Pars petrosa +DZS-6 F Hungary_Sarmatian_Period DZS-6 n/a n/a n/a n/a n/a Hungary HU Dormánd Zsidótemető 47.723712 20.413808 n/a n/a n/a n/a n/a n/a n/a n/a W3a1 n/a Bone_Pars petrosa +DZS-5 M Hungary_Sarmatian_Period DZS-5 n/a n/a n/a n/a n/a Hungary HU Dormánd Zsidótemető 47.723712 20.413808 n/a n/a n/a n/a n/a n/a n/a n/a U5a2+16294 E1b1b1a1b1a Bone_Pars petrosa +DZS-48 F Hungary_Sarmatian_Period DZS-48 n/a n/a n/a n/a n/a Hungary HU Dormánd Zsidótemető 47.723712 20.413808 n/a n/a n/a n/a n/a n/a n/a n/a H9a n/a Bone_Pars petrosa +DZS-44 M Hungary_Sarmatian_Period DZS-44 n/a n/a n/a n/a n/a Hungary HU Dormánd Zsidótemető 47.723712 20.413808 n/a n/a n/a n/a n/a n/a n/a n/a H+152 R1a1a1b1a2a3a~ Bone_Pars petrosa +DZS-43 M Hungary_Sarmatian_Period DZS-43 n/a n/a n/a n/a n/a Hungary HU Dormánd Zsidótemető 47.723712 20.413808 n/a n/a n/a n/a n/a n/a n/a n/a W3a1 R1b1a1b1b3 Bone_Pars petrosa +DZS-42 F Hungary_Sarmatian_Period DZS-42 n/a n/a n/a n/a n/a Hungary HU Dormánd Zsidótemető 47.723712 20.413808 n/a n/a n/a n/a n/a n/a n/a n/a U5b1b1a n/a Bone_Pars petrosa +DZS-41 M Hungary_Sarmatian_Period DZS-41 n/a n/a n/a n/a n/a Hungary HU Dormánd Zsidótemető 47.723712 20.413808 n/a n/a n/a n/a n/a n/a n/a n/a R1b1 R1a1a1b2g~ tooth +DZS-3 M Hungary_Sarmatian_Period DZS-3 n/a n/a n/a n/a n/a Hungary HU Dormánd Zsidótemető 47.723712 20.413808 n/a n/a n/a n/a n/a n/a n/a n/a X2b6a E1b1b1a1b1a Bone_Pars petrosa +DZS-1 F Hungary_Sarmatian_Period DZS-1 n/a n/a n/a n/a n/a Hungary HU Dormánd Zsidótemető 47.723712 20.413808 n/a n/a n/a n/a n/a n/a n/a n/a U5a2a1 n/a Bone_Pars petrosa +CSU2-43 M Hungary_Sarmatian_Period CSU2-43 n/a n/a n/a n/a n/a Hungary HU Szeged Csongrádi út 46.266331 20.151294 n/a n/a n/a n/a n/a n/a n/a n/a U4b1a1a1 R1a1a1b2a~ Bone_Pars petrosa +CSU2-39 M Hungary_Sarmatian_Period CSU2-39 n/a n/a n/a n/a n/a Hungary HU Szeged Csongrádi út 46.266331 20.151294 n/a n/a n/a n/a n/a n/a n/a n/a H1a3a3 I2a1a2a1a1a2 tooth +CSO-526 F Hungary_Sarmatian_Period CSO-526 n/a n/a n/a n/a n/a Hungary HU Csanádpalota Országhatár 46.243905 20.722707 n/a n/a n/a n/a n/a n/a n/a n/a H60a n/a Bone_Pars petrosa +CSO-507 M Hungary_Sarmatian_Period CSO-507 n/a n/a n/a n/a n/a Hungary HU Csanádpalota Országhatár 46.243905 20.722707 n/a n/a n/a n/a n/a n/a n/a n/a HV+16311 R1a1a1b1a2b3a1d~ Bone_Pars petrosa +CSO-502 M Hungary_Sarmatian_Period CSO-502 n/a n/a n/a n/a n/a Hungary HU Csanádpalota Országhatár 46.243905 20.722707 n/a n/a n/a n/a n/a n/a n/a n/a HV+16311 E1b1b1a1b1a15b~ Bone_Pars petrosa +CSK-9 M Hungary_Hun_Period CSK-9 n/a n/a n/a n/a n/a Hungary HU Csongrád Kenderföldek 46.72424 20.131122 n/a n/a n/a n/a n/a n/a n/a n/a H39 R1a1a1b2a2b2b~ tooth +CSK-61 F Hungary_Hun_Period CSK-61 n/a n/a n/a n/a n/a Hungary HU Csongrád Kenderföldek 46.72424 20.131122 n/a n/a n/a n/a n/a n/a n/a n/a J1c n/a Bone_Pars petrosa +CSK-25 M Hungary_Hun_Period CSK-25 n/a n/a n/a n/a n/a Hungary HU Csongrád Kenderföldek 46.72424 20.131122 n/a n/a n/a n/a n/a n/a n/a n/a U3a1 I1a3a1a1~ Bone_Pars petrosa +CSK-18 F Hungary_Hun_Period CSK-18 n/a n/a n/a n/a n/a Hungary HU Csongrád Kenderföldek 46.72424 20.131122 n/a n/a n/a n/a n/a n/a n/a n/a T1a1 n/a tooth +CSK-137 M Hungary_Hun_Period CSK-137 n/a n/a n/a n/a n/a Hungary HU Csongrád Kenderföldek 46.72424 20.131122 n/a n/a n/a n/a n/a n/a n/a n/a H11a2 R1a1a1b1a1a Bone_Pars petrosa +CSK-135 M Hungary_Hun_Period CSK-135 n/a n/a n/a n/a n/a Hungary HU Csongrád Kenderföldek 46.72424 20.131122 n/a n/a n/a n/a n/a n/a n/a n/a H4a1 R1a1a1b2a2a~ Bone_Pars petrosa +CSK-127 F Hungary_Hun_Period CSK-127 n/a n/a n/a n/a n/a Hungary HU Csongrád Kenderföldek 46.72424 20.131122 n/a n/a n/a n/a n/a n/a n/a n/a J1c1b1a n/a tooth +CSK-126 F Hungary_Hun_Period CSK-126 n/a n/a n/a n/a n/a Hungary HU Csongrád Kenderföldek 46.72424 20.131122 n/a n/a n/a n/a n/a n/a n/a n/a T2b n/a tooth +CSK-101 M Hungary_Hun_Period CSK-101 n/a n/a n/a n/a n/a Hungary HU Csongrád Kenderföldek 46.72424 20.131122 n/a n/a n/a n/a n/a n/a n/a n/a H+195 R1a1a1b2a2a3a1~ tooth +BOT-2 M Romania_Sarmatian_Period BOT-2 n/a n/a n/a n/a n/a Romania RO Botoșani (Botoșani county) Botoșani (Botoșani county) 47.743384 26.665012 n/a n/a n/a n/a n/a n/a n/a n/a T2 R1a1a1b1a2a1a1a~ tooth +AND-177 F Hungary_Sarmatian_Period AND-177 n/a n/a n/a n/a n/a Hungary HU Apátfalva Nagyút dűlő M43, 43. lh 46.218943 20.621919 n/a n/a n/a n/a n/a n/a n/a n/a H8c n/a Bone_Pars petrosa +AND-145 F Hungary_Sarmatian_Period AND-145 n/a n/a n/a n/a n/a Hungary HU Apátfalva Nagyút dűlő M43, 43. lh 46.218943 20.621919 n/a n/a n/a n/a n/a n/a n/a n/a U4b3 n/a Bone_Pars petrosa +AND-138 M Hungary_Sarmatian_Period AND-138 n/a n/a n/a n/a n/a Hungary HU Apátfalva Nagyút dűlő M43, 43. lh 46.218943 20.621919 n/a n/a n/a n/a n/a n/a n/a n/a N1a1a1a2 R1a1a1b2a2b2b2~ Bone_Pars petrosa +AND-131 M Hungary_Sarmatian_Period AND-131 n/a n/a n/a n/a n/a Hungary HU Apátfalva Nagyút dűlő M43, 43. lh 46.218943 20.621919 n/a n/a n/a n/a n/a n/a n/a n/a H11a2 R1a1a1b2a2b2b2~ tooth +AND-128 M Hungary_Sarmatian_Period AND-128 n/a n/a n/a n/a n/a Hungary HU Apátfalva Nagyút dűlő M43, 43. lh 46.218943 20.621919 n/a n/a n/a n/a n/a n/a n/a n/a N1a1a1a2 R1a1a1b2a2b2b2~ tooth +AFM-940 F Hungary_Sarmatian_Period AFM-940 n/a n/a n/a n/a n/a Hungary HU Apc Farkas-major 47.793192 19.692047 n/a n/a n/a n/a n/a n/a n/a n/a U3b1b n/a Bone_Pars petrosa +AFM-590 F Hungary_Sarmatian_Period AFM-590 n/a n/a n/a n/a n/a Hungary HU Apc Farkas-major 47.793192 19.692047 n/a n/a n/a n/a n/a n/a n/a n/a H41a n/a Bone_Pars petrosa +AFM-273 M Hungary_Sarmatian_Period AFM-273 n/a n/a n/a n/a n/a Hungary HU Apc Farkas-major 47.793192 19.692047 n/a n/a n/a n/a n/a n/a n/a n/a H8c R1a1a1b2a2b2b2~ tooth +AFM-213 F Hungary_Sarmatian_Period AFM-213 n/a n/a n/a n/a n/a Hungary HU Apc Farkas-major 47.793192 19.692047 n/a n/a n/a n/a n/a n/a n/a n/a H n/a Bone_Pars petrosa +AFM-1861 F Hungary_Sarmatian_Period AFM-1861 n/a n/a n/a n/a n/a Hungary HU Apc Farkas-major 47.793192 19.692047 n/a n/a n/a n/a n/a n/a n/a n/a T1a1 n/a Bone_Pars petrosa +AFM-1255 M Hungary_Sarmatian_Period AFM-1255 n/a n/a n/a n/a n/a Hungary HU Apc Farkas-major 47.793192 19.692047 n/a n/a n/a n/a n/a n/a n/a n/a H2a1a N1a1a1a1a2 Bone_Pars petrosa +AFM-1156 F Hungary_Sarmatian_Period AFM-1156 n/a n/a n/a n/a n/a Hungary HU Apc Farkas-major 47.793192 19.692047 n/a n/a n/a n/a n/a n/a n/a n/a U2e1b n/a Bone_Pars petrosa +KAP-2 F Hungary_Hun_Period KAPper2 n/a n/a n/a n/a n/a Hungary HU Kapolcs Kapolcs 46.95479 17.60684 n/a n/a n/a n/a n/a n/a n/a n/a HV16 n/a Bone_Pars petrosa +KDS-121 F Hungary_Sarmatian_Period KDSper121 n/a n/a n/a n/a n/a Hungary HU Kiskundorozsma Subasa 26/78 46.273642 20.012576 n/a n/a n/a n/a n/a n/a n/a n/a T2c1a n/a Bone_Pars petrosa +KDS-138 M Hungary_Sarmatian_Period KDSper138 n/a n/a n/a n/a n/a Hungary HU Kiskundorozsma Subasa 26/79 46.273642 20.012576 n/a n/a n/a n/a n/a n/a n/a n/a U5a1h R1a1a1b2a2b2b2~ Bone_Pars petrosa +KDS-148 M Hungary_Sarmatian_Period KDSper148 n/a n/a n/a n/a n/a Hungary HU Kiskundorozsma Subasa 26/80 46.273642 20.012576 n/a n/a n/a n/a n/a n/a n/a n/a W3a1a1 R1a1a1b2a2b2b2~ Bone_Pars petrosa +KDS-260 M Hungary_Sarmatian_Period KDSper260 n/a n/a n/a n/a n/a Hungary HU Kiskundorozsma Subasa 26/81 46.273642 20.012576 n/a n/a n/a n/a n/a n/a n/a n/a T1a R1a1a1b2 Bone_Pars petrosa +KM-1005 F Hungary_Sarmatian_Period KMper1005 n/a n/a n/a n/a n/a Hungary HU Kecskemét Mercedes RL 15 46.867396 19.712997 n/a n/a n/a n/a n/a n/a n/a n/a H11a2 n/a Bone_Pars petrosa +KM-156 F Hungary_Sarmatian_Period KMper156 n/a n/a n/a n/a n/a Hungary HU Kecskemét Mindszenti-dűlő II, Mercedes RL12 (RL 17) 46.867396 19.712997 n/a n/a n/a n/a n/a n/a n/a n/a H6a1a n/a Bone_Pars petrosa +KM-199 F Hungary_Sarmatian_Period KMper199 n/a n/a n/a n/a n/a Hungary HU Kecskemét Mindszenti-dűlő II, Mercedes RL12 (RL 17) 46.867396 19.712997 n/a n/a n/a n/a n/a n/a n/a n/a H3k n/a Bone_Pars petrosa +KM-747 F Hungary_Sarmatian_Period KMper747 n/a n/a n/a n/a n/a Hungary HU Kecskemét Mercedes RL 15 46.867396 19.712997 n/a n/a n/a n/a n/a n/a n/a n/a H7b1 n/a tooth +MDH-342 F Hungary_Sarmatian_Period MDHper342 n/a n/a n/a n/a n/a Hungary HU Madaras Halmok 46.0414 19.279793 n/a n/a n/a n/a n/a n/a n/a n/a J1c2k n/a Bone_Pars petrosa +NKL-1038 F Hungary_Hun_Period NKLper1038 n/a n/a n/a n/a n/a Hungary HU Nagykálló Kis Ludas-tó dűlő 47.87549 21.84658 n/a n/a n/a n/a n/a n/a n/a n/a J1b1a1 n/a Bone_Pars petrosa +OFU-138 M Hungary_Sarmatian_Period OFUper182 n/a n/a n/a n/a n/a Hungary HU Óföldeák Ürmös II M43 10. lh. 46.294975 20.438384 n/a n/a n/a n/a n/a n/a n/a n/a H7a1 R1b1a1b1a1a2 Bone_Pars petrosa +OFU-15 M Hungary_Sarmatian_Period OFUper15 n/a n/a n/a n/a n/a Hungary HU Óföldeák Ürmös II M43 10. lh. 46.294975 20.438384 n/a n/a n/a n/a n/a n/a n/a n/a K1b1c I1a3a~ Bone_Pars petrosa +OFU-168 M Hungary_Sarmatian_Period OFUper168 n/a n/a n/a n/a n/a Hungary HU Óföldeák Ürmös II M43 10. lh. 46.294975 20.438384 n/a n/a n/a n/a n/a n/a n/a n/a H1b1+16362 I1a3a1~ Bone_Pars petrosa +OFU-190 F Hungary_Hun_Period OFUper190 n/a n/a n/a n/a n/a Hungary HU Óföldeák Ürmös M43 9-10. lh. 46.294975 20.438384 n/a n/a n/a n/a n/a n/a n/a n/a T2a1a n/a Bone_Pars petrosa +OFU-191 F Hungary_Hun_Period OFUper191 n/a n/a n/a n/a n/a Hungary HU Óföldeák Ürmös M43 9-10. lh. 46.294975 20.438384 n/a n/a n/a n/a n/a n/a n/a n/a N1a1a1a1 n/a Bone_Pars petrosa +OFU-26 M Hungary_Sarmatian_Period OFUper35 n/a n/a n/a n/a n/a Hungary HU Óföldeák Ürmös II M43 10. lh. 46.294975 20.438384 n/a n/a n/a n/a n/a n/a n/a n/a H1c4 R1b1a1b1a1a1c2b2b1a~ Bone_Pars petrosa +OFU-27 F Hungary_Sarmatian_Period OFUper36 n/a n/a n/a n/a n/a Hungary HU Óföldeák Ürmös II M43 10. lh. 46.294975 20.438384 n/a n/a n/a n/a n/a n/a n/a n/a H+152 n/a Bone_Pars petrosa +OFU-422 M Hungary_Hun_Period OFUper176 n/a n/a n/a n/a n/a Hungary HU Óföldeák Ürmös M43 9-10. lh. 46.294975 20.438384 n/a n/a n/a n/a n/a n/a n/a n/a HV4a1 E1b1b1a1b1~ Bone_Pars petrosa +OFU-93 F Hungary_Sarmatian_Period OFUper93 n/a n/a n/a n/a n/a Hungary HU Óföldeák Ürmös II M43 10. lh. 46.294975 20.438384 n/a n/a n/a n/a n/a n/a n/a n/a K1a3a2 n/a Bone_Pars petrosa +PM-5 F Hungary_Hun_Period PMper5 n/a n/a n/a n/a n/a Hungary HU Pécs Málom 46.02793 18.216721 n/a n/a n/a n/a n/a n/a n/a n/a K1a3a3 n/a Bone_Pars petrosa +PMD-564 F Hungary_Hun_Period PMDper564 n/a n/a n/a n/a n/a Hungary HU Páty Malom-dűlő, 9. lh. 47.515993 18.831936 n/a n/a n/a n/a n/a n/a n/a n/a H7b n/a Bone_Pars petrosa +RAK-115 F Hungary_Sarmatian_Period RAKper115 n/a n/a n/a n/a n/a Hungary HU Budapest XVII. Rákoscsaba, Péceli út 47.4796 19.293288 n/a n/a n/a n/a n/a n/a n/a n/a D4i2 n/a Bone_Pars petrosa +RAK-136 F Hungary_Sarmatian_Period RAKper136 n/a n/a n/a n/a n/a Hungary HU Budapest XVII. Rákoscsaba, Péceli út 47.4796 19.293288 n/a n/a n/a n/a n/a n/a n/a n/a J1c12b n/a Bone_Pars petrosa +RAK-211 M Hungary_Sarmatian_Period RAKper211 n/a n/a n/a n/a n/a Hungary HU Budapest XVII. Rákoscsaba, Péceli út 47.4796 19.293288 n/a n/a n/a n/a n/a n/a n/a n/a N1b1a2 G2a2b2a1a1a1b1b Bone_Pars petrosa +RAK-251 F Hungary_Sarmatian_Period RAKper251 n/a n/a n/a n/a n/a Hungary HU Budapest XVII. Rákoscsaba, Péceli út 47.4796 19.293288 n/a n/a n/a n/a n/a n/a n/a n/a H8b n/a Bone_Pars petrosa +SZB-1 M Hungary_Hun_Period SZBper1 n/a n/a n/a n/a n/a Hungary HU Szabadszállás Boczka tanya 46.875624 19.221652 n/a n/a n/a n/a n/a n/a n/a n/a HV0d I1a3a1a2a1 Bone_Pars petrosa +TD-SZ M Hungary_Sarmatian_Period TDperSZ n/a n/a n/a n/a n/a Hungary HU Tiszadob Sziget 48.006548 21.181807 n/a n/a n/a n/a n/a n/a n/a n/a U5b1+16189+@16192 G2a2a1a2a2a1 Bone_Pars petrosa diff --git a/packages/2025_Schuetz_Sarmatians/2025_Schuetz_Sarmatians.ssf b/packages/2025_Schuetz_Sarmatians/2025_Schuetz_Sarmatians.ssf new file mode 100644 index 0000000..fc65cc5 --- /dev/null +++ b/packages/2025_Schuetz_Sarmatians/2025_Schuetz_Sarmatians.ssf @@ -0,0 +1,157 @@ +poseidon_IDs udg library_built notes run_accession study_accession sample_accession sample_alias secondary_sample_accession first_public last_updated instrument_model library_layout library_source instrument_platform library_name library_strategy 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/007/ERR14893207/ERR14893207_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/007/ERR14893207/ERR14893207_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/007/ERR14893207/ERR14893207_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/007/ERR14893207/ERR14893207_2.fastq.gz 1745991370;1747127636 a9e0c4c59e8cdd942d1e53740c1914ff;5d811a615b1903a25788fa6c486c20b8 115630186 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893207/HVF-15.bam 8841011a4441ec7e6e96bccdb8779d5c +HVF-17 half ds n/a ERR14893208 PRJEB80732 SAMEA118205436 HVF-17 ERS24264124 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA HVF-17 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/008/ERR14893208/ERR14893208_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/008/ERR14893208/ERR14893208_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/008/ERR14893208/ERR14893208_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/008/ERR14893208/ERR14893208_2.fastq.gz 1744277410;1741297019 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/021/ERR14893221/ERR14893221_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/021/ERR14893221/ERR14893221_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/021/ERR14893221/ERR14893221_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/021/ERR14893221/ERR14893221_2.fastq.gz 1557510777;1559844065 26b65e59a7a8a8dd73b7b12bebc50650;4dd227bbd5b2de73543aa5b0bd148ef5 85783238 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893221/AFM-273.bam 9bf6c439f324faebaa05e52de5274d57 +AFM-940 half ds n/a ERR14893223 PRJEB80732 SAMEA118205451 AFM-940 ERS24264139 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA AFM-940 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/023/ERR14893223/ERR14893223_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/023/ERR14893223/ERR14893223_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/023/ERR14893223/ERR14893223_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/023/ERR14893223/ERR14893223_2.fastq.gz 1998850494;2015782124 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/030/ERR14893230/ERR14893230_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/030/ERR14893230/ERR14893230_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/030/ERR14893230/ERR14893230_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/030/ERR14893230/ERR14893230_2.fastq.gz 2656212027;2684151254 a3a4dc10152fb62a31d04acf14865e1b;f2ff836a0306f3344cebd2a15bda6a9d 155890152 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893230/RAK-251.bam 377828a45dcb59ad4ba0b1ded00677f6 +KDS-121 half ds n/a ERR14893235 PRJEB80732 SAMEA118205463 KDS-121 ERS24264151 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA KDS-121 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/035/ERR14893235/ERR14893235_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/035/ERR14893235/ERR14893235_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/035/ERR14893235/ERR14893235_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/035/ERR14893235/ERR14893235_2.fastq.gz 1527303381;1528398053 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/040/ERR14893240/ERR14893240_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/040/ERR14893240/ERR14893240_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/040/ERR14893240/ERR14893240_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/040/ERR14893240/ERR14893240_2.fastq.gz 715497302;716713746 aef5ae95727d38e317e21f8dfd67c096;0dd96b8c3167f368f4a0b15407e7f17f 41248724 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893240/MDH-48.bam c0ae627a0de55efea42a998c5de01c69 +MDH-178 half ds n/a ERR14893244 PRJEB80732 SAMEA118205472 MDH-178 ERS24264160 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA MDH-178 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/044/ERR14893244/ERR14893244_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/044/ERR14893244/ERR14893244_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/044/ERR14893244/ERR14893244_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/044/ERR14893244/ERR14893244_2.fastq.gz 2341236086;2344457674 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/048/ERR14893248/ERR14893248_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/048/ERR14893248/ERR14893248_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/048/ERR14893248/ERR14893248_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/048/ERR14893248/ERR14893248_2.fastq.gz 2238011424;2247199615 508c6838cbc0bf38f68c0eea3d7492c6;7348551601dd3fac1c78e937f0ec2548 128600422 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893248/MDH-249.bam 4510307a463a54362f2498fff5069e0e +MDH-342 half ds n/a ERR14893252 PRJEB80732 SAMEA118205480 MDH-342 ERS24264168 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA MDH-342 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/052/ERR14893252/ERR14893252_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/052/ERR14893252/ERR14893252_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/052/ERR14893252/ERR14893252_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/052/ERR14893252/ERR14893252_2.fastq.gz 4697666466;4707389202 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/057/ERR14893257/ERR14893257_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/057/ERR14893257/ERR14893257_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/057/ERR14893257/ERR14893257_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/057/ERR14893257/ERR14893257_2.fastq.gz 2456568955;2460195997 6070f8fd87bb12ca684a5ab20d11428f;e4d228ce7d99bc4c7dac7d167e74e004 128661258 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893257/MDH-444.bam fd99b3caf6cb18071ae3d27ca6dc5899 +MDH-592 half ds n/a ERR14893262 PRJEB80732 SAMEA118205490 MDH-592 ERS24264178 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA MDH-592 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/062/ERR14893262/ERR14893262_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/062/ERR14893262/ERR14893262_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/062/ERR14893262/ERR14893262_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/062/ERR14893262/ERR14893262_2.fastq.gz 2104542566;2112567314 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/012/ERR14893212/ERR14893212_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/012/ERR14893212/ERR14893212_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/012/ERR14893212/ERR14893212_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/012/ERR14893212/ERR14893212_2.fastq.gz 2498871710;2502068750 74344e0974981e683486e496d88b2b9e;d66a0db4ed8b6eedb79e93ce9f2a5628 162711624 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893212/MIJ-3.bam 43d3abccaa868662aaf50e02ba33ded3 +MIJ-7 half ds n/a ERR14893214 PRJEB80732 SAMEA118205442 MIJ-7 ERS24264130 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA MIJ-7 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/014/ERR14893214/ERR14893214_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/014/ERR14893214/ERR14893214_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/014/ERR14893214/ERR14893214_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/014/ERR14893214/ERR14893214_2.fastq.gz 2701455724;2736587904 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/025/ERR14893225/ERR14893225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/025/ERR14893225/ERR14893225_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/025/ERR14893225/ERR14893225_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/025/ERR14893225/ERR14893225_2.fastq.gz 2356112024;2342074733 ac8b80318c19db851992db35cb45a5fd;c97394d676a736017e61f4b0935060b7 134984878 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893225/AFM-1255.bam c0a682d848b95ecdf1ebae544c683399 +AFM-1861 half ds n/a ERR14893226 PRJEB80732 SAMEA118205454 AFM-1861 ERS24264142 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA AFM-1861 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/026/ERR14893226/ERR14893226_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/026/ERR14893226/ERR14893226_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/026/ERR14893226/ERR14893226_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/026/ERR14893226/ERR14893226_2.fastq.gz 2552149153;2553666396 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/043/ERR14893243/ERR14893243_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/043/ERR14893243/ERR14893243_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/043/ERR14893243/ERR14893243_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/043/ERR14893243/ERR14893243_2.fastq.gz 3521525813;3523966487 e760dbcdc03d59a44a91c0afa55f7c24;f6e41864d92f8c84b09a1a1bdb255b0c 202011084 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893243/MDH-162.bam 05a7f987aa5ec628926e9d36c696a493 +MDH-188 half ds n/a ERR14893245 PRJEB80732 SAMEA118205473 MDH-188 ERS24264161 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA MDH-188 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/045/ERR14893245/ERR14893245_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/045/ERR14893245/ERR14893245_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/045/ERR14893245/ERR14893245_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/045/ERR14893245/ERR14893245_2.fastq.gz 2294104195;2317374344 0df3e09fa0e167d9d4a1cf8aaad8978c;5cda0a4cad1f278ab9b2756d7f6ddd1b 121267574 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893245/MDH-188.bam 1d8a57097140a7d0065b60d284af00d4 +MDH-209 half ds n/a ERR14893246 PRJEB80732 SAMEA118205474 MDH-209 ERS24264162 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA MDH-209 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/046/ERR14893246/ERR14893246_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/046/ERR14893246/ERR14893246_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/046/ERR14893246/ERR14893246_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/046/ERR14893246/ERR14893246_2.fastq.gz 3460733699;3461240896 de9de869b3af53c09ed6a7f5aa6ab81a;29ec13634fc0c5458b2ae9ed1117aaef 208043796 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893246/MDH-209.bam b704a0b211185d6fd20df20fa267260c +MDH-263 half ds n/a ERR14893249 PRJEB80732 SAMEA118205477 MDH-263 ERS24264165 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA MDH-263 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/049/ERR14893249/ERR14893249_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/049/ERR14893249/ERR14893249_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/049/ERR14893249/ERR14893249_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/049/ERR14893249/ERR14893249_2.fastq.gz 2401629506;2425794960 bcfffbcd93006dd8b612fac36571ee08;a123007e6f3541b2f660a183a30817fa 133566532 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893249/MDH-263.bam b699900e71eadd37da74928992cca114 +MDH-265 half ds n/a ERR14893250 PRJEB80732 SAMEA118205478 MDH-265 ERS24264166 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA MDH-265 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/050/ERR14893250/ERR14893250_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/050/ERR14893250/ERR14893250_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/050/ERR14893250/ERR14893250_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/050/ERR14893250/ERR14893250_2.fastq.gz 3273686944;3277196538 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/053/ERR14893253/ERR14893253_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/053/ERR14893253/ERR14893253_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/053/ERR14893253/ERR14893253_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/053/ERR14893253/ERR14893253_2.fastq.gz 1713782272;1736418088 d79cf2d4e372548d9f4178e35b53332b;1e45ec3c216f622df104ba7a07fb4a21 80880618 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893253/MDH-344.bam cedb6f0f400f18cc0e4c4078ffc82086 +MDH-405 half ds n/a ERR14893255 PRJEB80732 SAMEA118205483 MDH-405 ERS24264171 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA MDH-405 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/055/ERR14893255/ERR14893255_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/055/ERR14893255/ERR14893255_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/055/ERR14893255/ERR14893255_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/055/ERR14893255/ERR14893255_2.fastq.gz 533904267;534057537 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/080/ERR14893180/ERR14893180_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/080/ERR14893180/ERR14893180_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/080/ERR14893180/ERR14893180_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/080/ERR14893180/ERR14893180_2.fastq.gz 2062500506;2089490918 657454245ea31be6b913a170633433d6;8413b34cc7fc15bd6b23d64efdf88fe4 103332570 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893180/RAM-13.bam d77630818382d0bd000ab7b0413d160c +RLS-1 half ds n/a ERR14893181 PRJEB80732 SAMEA118205409 RLS-1 ERS24264096 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA RLS-1 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/081/ERR14893181/ERR14893181_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/081/ERR14893181/ERR14893181_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/081/ERR14893181/ERR14893181_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/081/ERR14893181/ERR14893181_2.fastq.gz 2385238290;2408083347 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/092/ERR14893192/ERR14893192_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/092/ERR14893192/ERR14893192_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/092/ERR14893192/ERR14893192_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/092/ERR14893192/ERR14893192_2.fastq.gz 1791420524;1783542695 d567b611eb2759c2300e36fada14f810;87b96069493726996599cbdbc034dadc 98350800 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893192/DZS-42.bam e4a03b2e679d89466103f7b1f0849ed0 +DZS-48 half ds n/a ERR14893195 PRJEB80732 SAMEA118205423 DZS-48 ERS24264111 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA DZS-48 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/095/ERR14893195/ERR14893195_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/095/ERR14893195/ERR14893195_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/095/ERR14893195/ERR14893195_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/095/ERR14893195/ERR14893195_2.fastq.gz 4069504682;4076869663 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/099/ERR14893199/ERR14893199_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/099/ERR14893199/ERR14893199_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/099/ERR14893199/ERR14893199_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/099/ERR14893199/ERR14893199_2.fastq.gz 2707361358;2707364877 01df137f050bfe2f6ae40d92bec7294e;0819b07fd70d194b12d48040d4ecd97c 161841730 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893199/MEH-2p.bam def7a38de285ef87660ad7162e35a430 +CSU2-39 half ds n/a ERR14893200 PRJEB80732 SAMEA118205428 CSU2-39 ERS24264116 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA CSU2-39 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/000/ERR14893200/ERR14893200_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/000/ERR14893200/ERR14893200_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/000/ERR14893200/ERR14893200_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/000/ERR14893200/ERR14893200_2.fastq.gz 2201026680;2220598208 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/058/ERR14893258/ERR14893258_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/058/ERR14893258/ERR14893258_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/058/ERR14893258/ERR14893258_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/058/ERR14893258/ERR14893258_2.fastq.gz 1026341637;1027299975 119715f04bbb98f4be05ce3fe21e26fb;01e72ebe3a9f8e08dcf82f5d3767c290 56716442 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893258/MDH-462.bam f58875371d341d6aac6697ba79198754 +MDH-514 half ds n/a ERR14893261 PRJEB80732 SAMEA118205489 MDH-514 ERS24264177 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA MDH-514 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/061/ERR14893261/ERR14893261_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/061/ERR14893261/ERR14893261_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/061/ERR14893261/ERR14893261_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/061/ERR14893261/ERR14893261_2.fastq.gz 2681770861;2685201206 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/077/ERR14893277/ERR14893277_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/077/ERR14893277/ERR14893277_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/077/ERR14893277/ERR14893277_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/077/ERR14893277/ERR14893277_2.fastq.gz 2695494384;2713363436 fbee96b1c5f183aba2e0583bede62387;1368492915ffa26d2786edf7ac79e116 169783386 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893277/OFU-27.bam 3c9f37ab7835fd44c38fa0466eccb870 +OFU-93 half ds n/a ERR14893278 PRJEB80732 SAMEA118205506 OFU-93 ERS24264194 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA OFU-93 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/078/ERR14893278/ERR14893278_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/078/ERR14893278/ERR14893278_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/078/ERR14893278/ERR14893278_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/078/ERR14893278/ERR14893278_2.fastq.gz 2521712604;2539971773 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/094/ERR14893294/ERR14893294_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/094/ERR14893294/ERR14893294_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/094/ERR14893294/ERR14893294_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/094/ERR14893294/ERR14893294_2.fastq.gz 2103638751;2110331791 319284d83ee0f1decf10c7ae86d5e1c5;6ea0e265db0482ac97874f4503035d5d 119541586 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893294/KM-3679.bam 0253908276dbb6c87830aec4158408f6 +NKT-32 half ds n/a ERR14893303 PRJEB80732 SAMEA118205531 NKT-32 ERS24264219 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA NKT-32 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/003/ERR14893303/ERR14893303_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/003/ERR14893303/ERR14893303_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/003/ERR14893303/ERR14893303_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/003/ERR14893303/ERR14893303_2.fastq.gz 2308584964;2347206388 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/008/ERR14893308/ERR14893308_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/008/ERR14893308/ERR14893308_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/008/ERR14893308/ERR14893308_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/008/ERR14893308/ERR14893308_2.fastq.gz 3550100726;3547414248 34efadebbdffd3d319ae9fbb5c509775;7ac055652e47f81510588d7d51e5ec74 238177858 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893308/CSK-61.bam f131b17efd5715a59356d585c94a9bac +CSK-101 half ds n/a ERR14893309 PRJEB80732 SAMEA118205537 CSK-101 ERS24264225 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA CSK-101 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/009/ERR14893309/ERR14893309_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/009/ERR14893309/ERR14893309_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/009/ERR14893309/ERR14893309_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/009/ERR14893309/ERR14893309_2.fastq.gz 2971261502;2998631859 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/013/ERR14893313/ERR14893313_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/013/ERR14893313/ERR14893313_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/013/ERR14893313/ERR14893313_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/013/ERR14893313/ERR14893313_2.fastq.gz 2649986196;2648810934 92f5e71770b7ed159f8f6c488ce69f42;45f1d2d05813b0c2cd81083e5c0a1292 162947276 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893313/CSK-137.bam 6f7d05b817aa7a6d537b32cb4f8a07ad +VIG-94-1 half ds n/a ERR14893325 PRJEB80732 SAMEA118205553 VIG-94-1 ERS24264241 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA VIG-94-1 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/025/ERR14893325/ERR14893325_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/025/ERR14893325/ERR14893325_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/025/ERR14893325/ERR14893325_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/025/ERR14893325/ERR14893325_2.fastq.gz 3906605922;3908649376 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/068/ERR14893268/ERR14893268_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/068/ERR14893268/ERR14893268_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/068/ERR14893268/ERR14893268_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/068/ERR14893268/ERR14893268_2.fastq.gz 2563025758;2559167038 7968cd8dd84fd55eb7092251f8c6fbbb;c6b781f5af1e2ac617a8ab37d5c938d5 155267448 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893268/PLG-5.bam e1d94cdc1ad69c62d2d9c39ae9be1adf +CSO-502 half ds n/a ERR14893270 PRJEB80732 SAMEA118205498 CSO-502 ERS24264186 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA CSO-502 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/070/ERR14893270/ERR14893270_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/070/ERR14893270/ERR14893270_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/070/ERR14893270/ERR14893270_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/070/ERR14893270/ERR14893270_2.fastq.gz 1822283002;1822868964 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/075/ERR14893275/ERR14893275_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/075/ERR14893275/ERR14893275_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/075/ERR14893275/ERR14893275_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/075/ERR14893275/ERR14893275_2.fastq.gz 2664911308;2709012054 5f18272d2931f9e6587eb06da98cb518;5ece8759ff8d51f90335360acfe404a5 163931478 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893275/OFU-15.bam 87f8c78d04affe2679fe7b9ac547d412 +OFU-26 half ds n/a ERR14893276 PRJEB80732 SAMEA118205504 OFU-26 ERS24264192 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA OFU-26 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/076/ERR14893276/ERR14893276_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/076/ERR14893276/ERR14893276_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/076/ERR14893276/ERR14893276_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/076/ERR14893276/ERR14893276_2.fastq.gz 2853683441;2882720808 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/080/ERR14893280/ERR14893280_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/080/ERR14893280/ERR14893280_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/080/ERR14893280/ERR14893280_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/080/ERR14893280/ERR14893280_2.fastq.gz 1975828071;2000632267 ee93a2436d5afff4f718726e6ff28a4d;ecc369a5057612c9cdb75f6989cecb45 115315140 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893280/OFU-168.bam 787de3f920022213c3ee47744945242d +TMA-2 half ds n/a ERR14893282 PRJEB80732 SAMEA118205510 TMA-2 ERS24264198 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA TMA-2 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/082/ERR14893282/ERR14893282_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/082/ERR14893282/ERR14893282_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/082/ERR14893282/ERR14893282_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/082/ERR14893282/ERR14893282_2.fastq.gz 1293826814;1289111012 a12d51aca9f9223b6da163e5f693374e;55ebdb0fd2e118fa03860055867b8333 71391130 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893282/TMA-2.bam aef1805591b49b5cf704aaef954e88e8 +TMA-9 half ds n/a ERR14893284 PRJEB80732 SAMEA118205512 TMA-9 ERS24264200 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA TMA-9 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/084/ERR14893284/ERR14893284_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/084/ERR14893284/ERR14893284_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/084/ERR14893284/ERR14893284_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/084/ERR14893284/ERR14893284_2.fastq.gz 2287855487;2281752541 e18d1f96ca0fbed4520c08b87a45995a;2038bfc1eadf2dcbf2ffb472369b28a7 129383066 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893284/TMA-9.bam ef1f6d81eaef7a6f1b3bba0d1efc96ba +TMA-36 half ds n/a ERR14893286 PRJEB80732 SAMEA118205514 TMA-36 ERS24264202 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA TMA-36 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/086/ERR14893286/ERR14893286_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/086/ERR14893286/ERR14893286_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/086/ERR14893286/ERR14893286_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/086/ERR14893286/ERR14893286_2.fastq.gz 1967094156;1967155337 5d902d5f17f6673382a0037f346a5e79;adbd512fef8cae6abdc4e26bbdd04938 109383582 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893286/TMA-36.bam 1e9ef157da889abf1c299d2e86327007 +TIV-13 half ds n/a ERR14893290 PRJEB80732 SAMEA118205518 TIV-13 ERS24264206 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA TIV-13 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/090/ERR14893290/ERR14893290_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/090/ERR14893290/ERR14893290_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/090/ERR14893290/ERR14893290_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/090/ERR14893290/ERR14893290_2.fastq.gz 3597619529;3616500294 7b101ce80a3d78c61e73638cf5ed6ac3;c14d38eb5d1ed6aebb90a96ec21a0705 251422908 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893290/TIV-13.bam ade61c5ed4499ffc7d4c2fb77e9d7ec9 +KM-156 half ds n/a ERR14893295 PRJEB80732 SAMEA118205523 KM-156 ERS24264211 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA KM-156 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/095/ERR14893295/ERR14893295_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/095/ERR14893295/ERR14893295_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/095/ERR14893295/ERR14893295_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/095/ERR14893295/ERR14893295_2.fastq.gz 1718330105;1723277464 0e784160b0d2897a4ed69268248a557a;d3a25f1d809aedaf660514b32f9a7d24 99027710 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893295/KM-156.bam 26e0221aa687bc127f712d5391449958 +KM-199 half ds n/a ERR14893296 PRJEB80732 SAMEA118205524 KM-199 ERS24264212 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA KM-199 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/096/ERR14893296/ERR14893296_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/096/ERR14893296/ERR14893296_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/096/ERR14893296/ERR14893296_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/096/ERR14893296/ERR14893296_2.fastq.gz 3074455822;3081607593 854bc5744b08355b279964ecc187a8fe;f8d09856739597ef225bf8dae0474327 183964284 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893296/KM-199.bam bfd4735954bca6a6c693b1d8f7ce1968 +KSZN-10321 half ds n/a ERR14893297 PRJEB80732 SAMEA118205525 KSZN-10321 ERS24264213 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA KSZN-10321 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/097/ERR14893297/ERR14893297_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/097/ERR14893297/ERR14893297_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/097/ERR14893297/ERR14893297_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/097/ERR14893297/ERR14893297_2.fastq.gz 2491461837;2546981728 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ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/002/ERR14893302/ERR14893302_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/002/ERR14893302/ERR14893302_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/002/ERR14893302/ERR14893302_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/002/ERR14893302/ERR14893302_2.fastq.gz 2189781124;2179886523 43b41d88bdeb337a91c6e0dcc920ef47;8d86fa0341fb60f9e8a1e7db2d6081ee 136547494 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893302/NKT-20.bam 6c9c0d40abf7fb1da2cf3ee628f1aec3 +CSK-126 half ds n/a ERR14893310 PRJEB80732 SAMEA118205538 CSK-126 ERS24264226 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA CSK-126 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/010/ERR14893310/ERR14893310_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/010/ERR14893310/ERR14893310_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/010/ERR14893310/ERR14893310_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/010/ERR14893310/ERR14893310_2.fastq.gz 3787360732;3815564630 2b220f030dc36855dfd01c83acb48d1f;a58e6747bb18b2debfa6fdedee7ef589 213088666 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893310/CSK-126.bam 36e1f5fb0d03b34d7f17bb2a79d2be06 +KAP-2 half ds n/a ERR14893315 PRJEB80732 SAMEA118205543 KAP-2 ERS24264231 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA KAP-2 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/015/ERR14893315/ERR14893315_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/015/ERR14893315/ERR14893315_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/015/ERR14893315/ERR14893315_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/015/ERR14893315/ERR14893315_2.fastq.gz 3413493001;3426822302 8bf678443c347d649f8f587b12d24d1d;d9671f0877ed94949e1c29a369c3e9a3 208263724 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893315/KAP-2.bam 83db655d3263eabe5a12cec2262e60de +MEM-2 half ds n/a ERR14893316 PRJEB80732 SAMEA118205544 MEM-2 ERS24264232 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA MEM-2 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/016/ERR14893316/ERR14893316_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/016/ERR14893316/ERR14893316_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/016/ERR14893316/ERR14893316_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/016/ERR14893316/ERR14893316_2.fastq.gz 1754237652;1762804340 f299260ae586ded4a960368a9da592a0;aaadb285d275dbae3a6f9a00faf2af8c 97273440 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893316/MEM-2.bam 419f7ee3b1e2b75b18693d7b16cad472 +NKL-1038 half ds n/a ERR14893318 PRJEB80732 SAMEA118205546 NKL-1038 ERS24264234 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA NKL-1038 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/018/ERR14893318/ERR14893318_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/018/ERR14893318/ERR14893318_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/018/ERR14893318/ERR14893318_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/018/ERR14893318/ERR14893318_2.fastq.gz 3496897986;3502292581 89e202e88145e5d972bd86cc30b565fc;40c1a9e678c352f2aefaef8b8f441418 203457822 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893318/NKL-1038.bam cd99bd0f473915b8e9abdcc64764cd81 +OFU-422 half ds n/a ERR14893321 PRJEB80732 SAMEA118205549 OFU-422 ERS24264237 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA OFU-422 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/021/ERR14893321/ERR14893321_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/021/ERR14893321/ERR14893321_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/021/ERR14893321/ERR14893321_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/021/ERR14893321/ERR14893321_2.fastq.gz 2734392690;2770577475 e922492287c2d2f3c3d52cb2b818d3df;bc8d811ee49acca87224aadb129ba4cb 163169898 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893321/OFU-422.bam ade38b463b04f3e1eed003a84126ce20 +PMD-564 half ds n/a ERR14893322 PRJEB80732 SAMEA118205550 PMD-564 ERS24264238 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA PMD-564 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/022/ERR14893322/ERR14893322_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/022/ERR14893322/ERR14893322_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/022/ERR14893322/ERR14893322_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/022/ERR14893322/ERR14893322_2.fastq.gz 1566793937;1566043685 4586a5335f377a94af44f9a1daba18ec;9f5990fdc74b5562fe97f67f5acdcf70 90332116 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893322/PMD-564.bam 8d65920cbfa93ae69e4bce4e0c098c92 +PM-5 half ds n/a ERR14893323 PRJEB80732 SAMEA118205551 PM-5 ERS24264239 2025-06-19 2025-06-19 Illumina NovaSeq 6000 PAIRED GENOMIC ILLUMINA PM-5 WGS ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/023/ERR14893323/ERR14893323_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR148/023/ERR14893323/ERR14893323_2.fastq.gz fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/023/ERR14893323/ERR14893323_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/ERR148/023/ERR14893323/ERR14893323_2.fastq.gz 2488624966;2518828712 341e8265b220161a39677cfb453c29da;04f0d9dd981fd4ec8acc17331d73ce1a 144931230 ftp.sra.ebi.ac.uk/vol1/run/ERR148/ERR14893323/PM-5.bam 4c6fdec6a3b3bca66eb3da3802d0bb88 diff --git a/packages/2025_Schuetz_Sarmatians/2025_Schuetz_Sarmatians.tsv b/packages/2025_Schuetz_Sarmatians/2025_Schuetz_Sarmatians.tsv new file mode 100644 index 0000000..51f5916 --- /dev/null +++ b/packages/2025_Schuetz_Sarmatians/2025_Schuetz_Sarmatians.tsv @@ -0,0 +1,157 @@ +Sample_Name Library_ID Lane Colour_Chemistry SeqType Organism Strandedness UDG_Treatment R1 R2 BAM R1_target_file R2_target_file BAM_target +LMO-8 LMO-8_LMO-8 1 4 PE Homo sapiens (modern human) double half /LMO-8_LMO-8_L1_R1.fastq.gz /LMO-8_LMO-8_L1_R2.fastq.gz NA ERR14893170_1.fastq.gz ERR14893170_2.fastq.gz NA +RAM-7 RAM-7_RAM-7 1 4 PE Homo sapiens (modern human) double half /RAM-7_RAM-7_L1_R1.fastq.gz /RAM-7_RAM-7_L1_R2.fastq.gz NA ERR14893171_1.fastq.gz ERR14893171_2.fastq.gz NA +LMF-7 LMF-7_LMF-7 1 4 PE Homo sapiens (modern human) double half /LMF-7_LMF-7_L1_R1.fastq.gz /LMF-7_LMF-7_L1_R2.fastq.gz NA ERR14893174_1.fastq.gz ERR14893174_2.fastq.gz NA +OLR-2 OLR-2_OLR-2 1 4 PE Homo sapiens (modern human) double half /OLR-2_OLR-2_L1_R1.fastq.gz /OLR-2_OLR-2_L1_R2.fastq.gz NA ERR14893175_1.fastq.gz ERR14893175_2.fastq.gz NA +POG-10 POG-10_POG-10 1 4 PE Homo sapiens (modern human) double half /POG-10_POG-10_L1_R1.fastq.gz /POG-10_POG-10_L1_R2.fastq.gz NA ERR14893177_1.fastq.gz ERR14893177_2.fastq.gz NA +PRO-37 PRO-37_PRO-37 1 4 PE Homo sapiens (modern human) double half /PRO-37_PRO-37_L1_R1.fastq.gz /PRO-37_PRO-37_L1_R2.fastq.gz NA ERR14893178_1.fastq.gz ERR14893178_2.fastq.gz NA +TAR-196 TAR-196_TAR-196 1 4 PE Homo sapiens (modern human) double half /TAR-196_TAR-196_L1_R1.fastq.gz /TAR-196_TAR-196_L1_R2.fastq.gz NA ERR14893184_1.fastq.gz ERR14893184_2.fastq.gz NA +TRE-33 TRE-33_TRE-33 1 4 PE Homo sapiens (modern human) double half /TRE-33_TRE-33_L1_R1.fastq.gz /TRE-33_TRE-33_L1_R2.fastq.gz NA ERR14893186_1.fastq.gz ERR14893186_2.fastq.gz NA +DZS-5 DZS-5_DZS-5 1 4 PE Homo sapiens (modern human) double half /DZS-5_DZS-5_L1_R1.fastq.gz /DZS-5_DZS-5_L1_R2.fastq.gz NA ERR14893189_1.fastq.gz ERR14893189_2.fastq.gz NA +DZS-6 DZS-6_DZS-6 1 4 PE Homo sapiens (modern human) double half /DZS-6_DZS-6_L1_R1.fastq.gz /DZS-6_DZS-6_L1_R2.fastq.gz NA ERR14893190_1.fastq.gz ERR14893190_2.fastq.gz NA +DZS-43 DZS-43_DZS-43 1 4 PE Homo sapiens (modern human) double half /DZS-43_DZS-43_L1_R1.fastq.gz /DZS-43_DZS-43_L1_R2.fastq.gz NA ERR14893193_1.fastq.gz ERR14893193_2.fastq.gz NA +DZS-44 DZS-44_DZS-44 1 4 PE Homo sapiens (modern human) double half /DZS-44_DZS-44_L1_R1.fastq.gz /DZS-44_DZS-44_L1_R2.fastq.gz NA ERR14893194_1.fastq.gz ERR14893194_2.fastq.gz NA +FKD-140 FKD-140_FKD-140 1 4 PE Homo sapiens (modern human) double half /FKD-140_FKD-140_L1_R1.fastq.gz /FKD-140_FKD-140_L1_R2.fastq.gz NA ERR14893197_1.fastq.gz ERR14893197_2.fastq.gz NA +CSU2-43 CSU2-43_CSU2-43 1 4 PE Homo sapiens (modern human) double half /CSU2-43_CSU2-43_L1_R1.fastq.gz /CSU2-43_CSU2-43_L1_R2.fastq.gz NA ERR14893201_1.fastq.gz ERR14893201_2.fastq.gz NA +HVF-3 HVF-3_HVF-3 1 4 PE Homo sapiens (modern human) double half /HVF-3_HVF-3_L1_R1.fastq.gz /HVF-3_HVF-3_L1_R2.fastq.gz NA ERR14893203_1.fastq.gz ERR14893203_2.fastq.gz NA +HVF-10 HVF-10_HVF-10 1 4 PE Homo sapiens (modern human) double half /HVF-10_HVF-10_L1_R1.fastq.gz /HVF-10_HVF-10_L1_R2.fastq.gz NA ERR14893206_1.fastq.gz ERR14893206_2.fastq.gz NA +HVF-15 HVF-15_HVF-15 1 4 PE Homo sapiens (modern human) double half /HVF-15_HVF-15_L1_R1.fastq.gz /HVF-15_HVF-15_L1_R2.fastq.gz NA ERR14893207_1.fastq.gz ERR14893207_2.fastq.gz NA +HVF-17 HVF-17_HVF-17 1 4 PE Homo sapiens (modern human) double half /HVF-17_HVF-17_L1_R1.fastq.gz /HVF-17_HVF-17_L1_R2.fastq.gz NA ERR14893208_1.fastq.gz ERR14893208_2.fastq.gz NA +HVF-21 HVF-21_HVF-21 1 4 PE Homo sapiens (modern human) double half /HVF-21_HVF-21_L1_R1.fastq.gz /HVF-21_HVF-21_L1_R2.fastq.gz NA ERR14893209_1.fastq.gz ERR14893209_2.fastq.gz NA +KAK-3 KAK-3_KAK-3 1 4 PE Homo sapiens (modern human) double half /KAK-3_KAK-3_L1_R1.fastq.gz /KAK-3_KAK-3_L1_R2.fastq.gz NA ERR14893210_1.fastq.gz ERR14893210_2.fastq.gz NA +MIJ-1 MIJ-1_MIJ-1 1 4 PE Homo sapiens (modern human) double half /MIJ-1_MIJ-1_L1_R1.fastq.gz /MIJ-1_MIJ-1_L1_R2.fastq.gz NA ERR14893211_1.fastq.gz ERR14893211_2.fastq.gz NA +AND-131 AND-131_AND-131 1 4 PE Homo sapiens (modern human) double half /AND-131_AND-131_L1_R1.fastq.gz /AND-131_AND-131_L1_R2.fastq.gz NA ERR14893216_1.fastq.gz ERR14893216_2.fastq.gz NA +AFM-273 AFM-273_AFM-273 1 4 PE Homo sapiens (modern human) double half /AFM-273_AFM-273_L1_R1.fastq.gz /AFM-273_AFM-273_L1_R2.fastq.gz NA ERR14893221_1.fastq.gz ERR14893221_2.fastq.gz NA +AFM-940 AFM-940_AFM-940 1 4 PE Homo sapiens (modern human) double half /AFM-940_AFM-940_L1_R1.fastq.gz /AFM-940_AFM-940_L1_R2.fastq.gz NA ERR14893223_1.fastq.gz ERR14893223_2.fastq.gz NA +AFM-1156 AFM-1156_AFM-1156 1 4 PE Homo sapiens (modern human) double half /AFM-1156_AFM-1156_L1_R1.fastq.gz /AFM-1156_AFM-1156_L1_R2.fastq.gz NA ERR14893224_1.fastq.gz ERR14893224_2.fastq.gz NA +RAK-251 RAK-251_RAK-251 1 4 PE Homo sapiens (modern human) double half /RAK-251_RAK-251_L1_R1.fastq.gz /RAK-251_RAK-251_L1_R2.fastq.gz NA ERR14893230_1.fastq.gz ERR14893230_2.fastq.gz NA +KDS-121 KDS-121_KDS-121 1 4 PE Homo sapiens (modern human) double half /KDS-121_KDS-121_L1_R1.fastq.gz /KDS-121_KDS-121_L1_R2.fastq.gz NA ERR14893235_1.fastq.gz ERR14893235_2.fastq.gz NA +KDS-138 KDS-138_KDS-138 1 4 PE Homo sapiens (modern human) double half /KDS-138_KDS-138_L1_R1.fastq.gz /KDS-138_KDS-138_L1_R2.fastq.gz NA ERR14893236_1.fastq.gz ERR14893236_2.fastq.gz NA +MDH-48 MDH-48_MDH-48 1 4 PE Homo sapiens (modern human) double half /MDH-48_MDH-48_L1_R1.fastq.gz /MDH-48_MDH-48_L1_R2.fastq.gz NA ERR14893240_1.fastq.gz ERR14893240_2.fastq.gz NA +MDH-178 MDH-178_MDH-178 1 4 PE Homo sapiens (modern human) double half /MDH-178_MDH-178_L1_R1.fastq.gz /MDH-178_MDH-178_L1_R2.fastq.gz NA ERR14893244_1.fastq.gz ERR14893244_2.fastq.gz NA +MDH-221 MDH-221_MDH-221 1 4 PE Homo sapiens (modern human) double half /MDH-221_MDH-221_L1_R1.fastq.gz /MDH-221_MDH-221_L1_R2.fastq.gz NA ERR14893247_1.fastq.gz ERR14893247_2.fastq.gz NA +MDH-249 MDH-249_MDH-249 1 4 PE Homo sapiens (modern human) double half /MDH-249_MDH-249_L1_R1.fastq.gz /MDH-249_MDH-249_L1_R2.fastq.gz NA ERR14893248_1.fastq.gz ERR14893248_2.fastq.gz NA +MDH-342 MDH-342_MDH-342 1 4 PE Homo sapiens (modern human) double half /MDH-342_MDH-342_L1_R1.fastq.gz /MDH-342_MDH-342_L1_R2.fastq.gz NA ERR14893252_1.fastq.gz ERR14893252_2.fastq.gz NA +MDH-357 MDH-357_MDH-357 1 4 PE Homo sapiens (modern human) double half /MDH-357_MDH-357_L1_R1.fastq.gz /MDH-357_MDH-357_L1_R2.fastq.gz NA ERR14893254_1.fastq.gz ERR14893254_2.fastq.gz NA +MDH-444 MDH-444_MDH-444 1 4 PE Homo sapiens (modern human) double half /MDH-444_MDH-444_L1_R1.fastq.gz /MDH-444_MDH-444_L1_R2.fastq.gz NA ERR14893257_1.fastq.gz ERR14893257_2.fastq.gz NA +MDH-592 MDH-592_MDH-592 1 4 PE Homo sapiens (modern human) double half /MDH-592_MDH-592_L1_R1.fastq.gz /MDH-592_MDH-592_L1_R2.fastq.gz NA ERR14893262_1.fastq.gz ERR14893262_2.fastq.gz NA +CSO-507 CSO-507_CSO-507 1 4 PE Homo sapiens (modern human) double half /CSO-507_CSO-507_L1_R1.fastq.gz /CSO-507_CSO-507_L1_R2.fastq.gz NA ERR14893271_1.fastq.gz ERR14893271_2.fastq.gz NA +MM2-215 MM2-215_MM2-215 1 4 PE Homo sapiens (modern human) double half /MM2-215_MM2-215_L1_R1.fastq.gz /MM2-215_MM2-215_L1_R2.fastq.gz NA ERR14893273_1.fastq.gz ERR14893273_2.fastq.gz NA +TMA-8 TMA-8_TMA-8 1 4 PE Homo sapiens (modern human) double half /TMA-8_TMA-8_L1_R1.fastq.gz /TMA-8_TMA-8_L1_R2.fastq.gz NA ERR14893283_1.fastq.gz ERR14893283_2.fastq.gz NA +TMA-10 TMA-10_TMA-10 1 4 PE Homo sapiens (modern human) double half /TMA-10_TMA-10_L1_R1.fastq.gz /TMA-10_TMA-10_L1_R2.fastq.gz NA ERR14893285_1.fastq.gz ERR14893285_2.fastq.gz NA +TD-SZ TD-SZ_TD-SZ 1 4 PE Homo sapiens (modern human) double half /TD-SZ_TD-SZ_L1_R1.fastq.gz /TD-SZ_TD-SZ_L1_R2.fastq.gz NA ERR14893287_1.fastq.gz ERR14893287_2.fastq.gz NA +TIV-9 TIV-9_TIV-9 1 4 PE Homo sapiens (modern human) double half /TIV-9_TIV-9_L1_R1.fastq.gz /TIV-9_TIV-9_L1_R2.fastq.gz NA ERR14893289_1.fastq.gz ERR14893289_2.fastq.gz NA +KM-747 KM-747_KM-747 1 4 PE Homo sapiens (modern human) double half /KM-747_KM-747_L1_R1.fastq.gz /KM-747_KM-747_L1_R2.fastq.gz NA ERR14893292_1.fastq.gz ERR14893292_2.fastq.gz NA +NKL-7 NKL-7_NKL-7 1 4 PE Homo sapiens (modern human) double half /NKL-7_NKL-7_L1_R1.fastq.gz /NKL-7_NKL-7_L1_R2.fastq.gz NA ERR14893298_1.fastq.gz ERR14893298_2.fastq.gz NA +NKL-112 NKL-112_NKL-112 1 4 PE Homo sapiens (modern human) double half /NKL-112_NKL-112_L1_R1.fastq.gz /NKL-112_NKL-112_L1_R2.fastq.gz NA ERR14893299_1.fastq.gz ERR14893299_2.fastq.gz NA +NKL-135 NKL-135_NKL-135 1 4 PE Homo sapiens (modern human) double half /NKL-135_NKL-135_L1_R1.fastq.gz /NKL-135_NKL-135_L1_R2.fastq.gz NA ERR14893300_1.fastq.gz ERR14893300_2.fastq.gz NA +RBR-118 RBR-118_RBR-118 1 4 PE Homo sapiens (modern human) double half /RBR-118_RBR-118_L1_R1.fastq.gz /RBR-118_RBR-118_L1_R2.fastq.gz NA ERR14893304_1.fastq.gz ERR14893304_2.fastq.gz NA +CSK-9 CSK-9_CSK-9 1 4 PE Homo sapiens (modern human) double half /CSK-9_CSK-9_L1_R1.fastq.gz /CSK-9_CSK-9_L1_R2.fastq.gz NA ERR14893305_1.fastq.gz ERR14893305_2.fastq.gz NA +CSK-18 CSK-18_CSK-18 1 4 PE Homo sapiens (modern human) double half /CSK-18_CSK-18_L1_R1.fastq.gz /CSK-18_CSK-18_L1_R2.fastq.gz NA ERR14893306_1.fastq.gz ERR14893306_2.fastq.gz NA +CSK-127 CSK-127_CSK-127 1 4 PE Homo sapiens (modern human) double half /CSK-127_CSK-127_L1_R1.fastq.gz /CSK-127_CSK-127_L1_R2.fastq.gz NA ERR14893311_1.fastq.gz ERR14893311_2.fastq.gz NA +SZB-1 SZB-1_SZB-1 1 4 PE Homo sapiens (modern human) double half /SZB-1_SZB-1_L1_R1.fastq.gz /SZB-1_SZB-1_L1_R2.fastq.gz NA ERR14893314_1.fastq.gz ERR14893314_2.fastq.gz NA +NKL-899 NKL-899_NKL-899 1 4 PE Homo sapiens (modern human) double half /NKL-899_NKL-899_L1_R1.fastq.gz /NKL-899_NKL-899_L1_R2.fastq.gz NA ERR14893317_1.fastq.gz ERR14893317_2.fastq.gz NA +OFU-190 OFU-190_OFU-190 1 4 PE Homo sapiens (modern human) double half /OFU-190_OFU-190_L1_R1.fastq.gz /OFU-190_OFU-190_L1_R2.fastq.gz NA ERR14893319_1.fastq.gz ERR14893319_2.fastq.gz NA +OFU-191 OFU-191_OFU-191 1 4 PE Homo sapiens (modern human) double half /OFU-191_OFU-191_L1_R1.fastq.gz /OFU-191_OFU-191_L1_R2.fastq.gz NA ERR14893320_1.fastq.gz ERR14893320_2.fastq.gz NA +SPF-1 SPF-1_SPF-1 1 4 PE Homo sapiens (modern human) double half /SPF-1_SPF-1_L1_R1.fastq.gz /SPF-1_SPF-1_L1_R2.fastq.gz NA ERR14893324_1.fastq.gz ERR14893324_2.fastq.gz NA +LMF-6 LMF-6_LMF-6 1 4 PE Homo sapiens (modern human) double half /LMF-6_LMF-6_L1_R1.fastq.gz /LMF-6_LMF-6_L1_R2.fastq.gz NA ERR14893173_1.fastq.gz ERR14893173_2.fastq.gz NA +PRO-47 PRO-47_PRO-47 1 4 PE Homo sapiens (modern human) double half /PRO-47_PRO-47_L1_R1.fastq.gz /PRO-47_PRO-47_L1_R2.fastq.gz NA ERR14893179_1.fastq.gz ERR14893179_2.fastq.gz NA +TAR-118 TAR-118_TAR-118 1 4 PE Homo sapiens (modern human) double half /TAR-118_TAR-118_L1_R1.fastq.gz /TAR-118_TAR-118_L1_R2.fastq.gz NA ERR14893182_1.fastq.gz ERR14893182_2.fastq.gz NA +TAF-11 TAF-11_TAF-11 1 4 PE Homo sapiens (modern human) double half /TAF-11_TAF-11_L1_R1.fastq.gz /TAF-11_TAF-11_L1_R2.fastq.gz NA ERR14893185_1.fastq.gz ERR14893185_2.fastq.gz NA +DZS-1 DZS-1_DZS-1 1 4 PE Homo sapiens (modern human) double half /DZS-1_DZS-1_L1_R1.fastq.gz /DZS-1_DZS-1_L1_R2.fastq.gz NA ERR14893187_1.fastq.gz ERR14893187_2.fastq.gz NA +DZS-3 DZS-3_DZS-3 1 4 PE Homo sapiens (modern human) double half /DZS-3_DZS-3_L1_R1.fastq.gz /DZS-3_DZS-3_L1_R2.fastq.gz NA ERR14893188_1.fastq.gz ERR14893188_2.fastq.gz NA +DZS-41 DZS-41_DZS-41 1 4 PE Homo sapiens (modern human) double half /DZS-41_DZS-41_L1_R1.fastq.gz /DZS-41_DZS-41_L1_R2.fastq.gz NA ERR14893191_1.fastq.gz ERR14893191_2.fastq.gz NA +FKD-60 FKD-60_FKD-60 1 4 PE Homo sapiens (modern human) double half /FKD-60_FKD-60_L1_R1.fastq.gz /FKD-60_FKD-60_L1_R2.fastq.gz NA ERR14893196_1.fastq.gz ERR14893196_2.fastq.gz NA +HVF-8 HVF-8_HVF-8 1 4 PE Homo sapiens (modern human) double half /HVF-8_HVF-8_L1_R1.fastq.gz /HVF-8_HVF-8_L1_R2.fastq.gz NA ERR14893205_1.fastq.gz ERR14893205_2.fastq.gz NA +MIJ-3 MIJ-3_MIJ-3 1 4 PE Homo sapiens (modern human) double half /MIJ-3_MIJ-3_L1_R1.fastq.gz /MIJ-3_MIJ-3_L1_R2.fastq.gz NA ERR14893212_1.fastq.gz ERR14893212_2.fastq.gz NA +MIJ-7 MIJ-7_MIJ-7 1 4 PE Homo sapiens (modern human) double half /MIJ-7_MIJ-7_L1_R1.fastq.gz /MIJ-7_MIJ-7_L1_R2.fastq.gz NA ERR14893214_1.fastq.gz ERR14893214_2.fastq.gz NA +AND-128 AND-128_AND-128 1 4 PE Homo sapiens (modern human) double half /AND-128_AND-128_L1_R1.fastq.gz /AND-128_AND-128_L1_R2.fastq.gz NA ERR14893215_1.fastq.gz ERR14893215_2.fastq.gz NA +AND-138 AND-138_AND-138 1 4 PE Homo sapiens (modern human) double half /AND-138_AND-138_L1_R1.fastq.gz /AND-138_AND-138_L1_R2.fastq.gz NA ERR14893217_1.fastq.gz ERR14893217_2.fastq.gz NA +AFM-213 AFM-213_AFM-213 1 4 PE Homo sapiens (modern human) double half /AFM-213_AFM-213_L1_R1.fastq.gz /AFM-213_AFM-213_L1_R2.fastq.gz NA ERR14893220_1.fastq.gz ERR14893220_2.fastq.gz NA +AFM-590 AFM-590_AFM-590 1 4 PE Homo sapiens (modern human) double half /AFM-590_AFM-590_L1_R1.fastq.gz /AFM-590_AFM-590_L1_R2.fastq.gz NA ERR14893222_1.fastq.gz ERR14893222_2.fastq.gz NA +AFM-1255 AFM-1255_AFM-1255 1 4 PE Homo sapiens (modern human) double half /AFM-1255_AFM-1255_L1_R1.fastq.gz /AFM-1255_AFM-1255_L1_R2.fastq.gz NA ERR14893225_1.fastq.gz ERR14893225_2.fastq.gz NA +AFM-1861 AFM-1861_AFM-1861 1 4 PE Homo sapiens (modern human) double half /AFM-1861_AFM-1861_L1_R1.fastq.gz /AFM-1861_AFM-1861_L1_R2.fastq.gz NA ERR14893226_1.fastq.gz ERR14893226_2.fastq.gz NA +HKB-309 HKB-309_HKB-309 1 4 PE Homo sapiens (modern human) double half /HKB-309_HKB-309_L1_R1.fastq.gz /HKB-309_HKB-309_L1_R2.fastq.gz NA ERR14893232_1.fastq.gz ERR14893232_2.fastq.gz NA +MDH-162 MDH-162_MDH-162 1 4 PE Homo sapiens (modern human) double half /MDH-162_MDH-162_L1_R1.fastq.gz /MDH-162_MDH-162_L1_R2.fastq.gz NA ERR14893243_1.fastq.gz ERR14893243_2.fastq.gz NA +MDH-188 MDH-188_MDH-188 1 4 PE Homo sapiens (modern human) double half /MDH-188_MDH-188_L1_R1.fastq.gz /MDH-188_MDH-188_L1_R2.fastq.gz NA ERR14893245_1.fastq.gz ERR14893245_2.fastq.gz NA +MDH-209 MDH-209_MDH-209 1 4 PE Homo sapiens (modern human) double half /MDH-209_MDH-209_L1_R1.fastq.gz /MDH-209_MDH-209_L1_R2.fastq.gz NA ERR14893246_1.fastq.gz ERR14893246_2.fastq.gz NA +MDH-263 MDH-263_MDH-263 1 4 PE Homo sapiens (modern human) double half /MDH-263_MDH-263_L1_R1.fastq.gz /MDH-263_MDH-263_L1_R2.fastq.gz NA ERR14893249_1.fastq.gz ERR14893249_2.fastq.gz NA +MDH-265 MDH-265_MDH-265 1 4 PE Homo sapiens (modern human) double half /MDH-265_MDH-265_L1_R1.fastq.gz /MDH-265_MDH-265_L1_R2.fastq.gz NA ERR14893250_1.fastq.gz ERR14893250_2.fastq.gz NA +MDH-291 MDH-291_MDH-291 1 4 PE Homo sapiens (modern human) double half /MDH-291_MDH-291_L1_R1.fastq.gz /MDH-291_MDH-291_L1_R2.fastq.gz NA ERR14893251_1.fastq.gz ERR14893251_2.fastq.gz NA +MDH-344 MDH-344_MDH-344 1 4 PE Homo sapiens (modern human) double half /MDH-344_MDH-344_L1_R1.fastq.gz /MDH-344_MDH-344_L1_R2.fastq.gz NA ERR14893253_1.fastq.gz ERR14893253_2.fastq.gz NA +MDH-405 MDH-405_MDH-405 1 4 PE Homo sapiens (modern human) double half /MDH-405_MDH-405_L1_R1.fastq.gz /MDH-405_MDH-405_L1_R2.fastq.gz NA ERR14893255_1.fastq.gz ERR14893255_2.fastq.gz NA +MDH-410 MDH-410_MDH-410 1 4 PE Homo sapiens (modern human) double half /MDH-410_MDH-410_L1_R1.fastq.gz /MDH-410_MDH-410_L1_R2.fastq.gz NA ERR14893256_1.fastq.gz ERR14893256_2.fastq.gz NA +MDH-483 MDH-483_MDH-483 1 4 PE Homo sapiens (modern human) double half /MDH-483_MDH-483_L1_R1.fastq.gz /MDH-483_MDH-483_L1_R2.fastq.gz NA ERR14893259_1.fastq.gz ERR14893259_2.fastq.gz NA +MDH-500 MDH-500_MDH-500 1 4 PE Homo sapiens (modern human) double half /MDH-500_MDH-500_L1_R1.fastq.gz /MDH-500_MDH-500_L1_R2.fastq.gz NA ERR14893260_1.fastq.gz ERR14893260_2.fastq.gz NA +MDH-630 MDH-630_MDH-630 1 4 PE Homo sapiens (modern human) double half /MDH-630_MDH-630_L1_R1.fastq.gz /MDH-630_MDH-630_L1_R2.fastq.gz NA ERR14893263_1.fastq.gz ERR14893263_2.fastq.gz NA +MDH-661 MDH-661_MDH-661 1 4 PE Homo sapiens (modern human) double half /MDH-661_MDH-661_L1_R1.fastq.gz /MDH-661_MDH-661_L1_R2.fastq.gz NA ERR14893265_1.fastq.gz ERR14893265_2.fastq.gz NA +BOT-2 BOT-2_BOT-2 1 4 PE Homo sapiens (modern human) double half /BOT-2_BOT-2_L1_R1.fastq.gz /BOT-2_BOT-2_L1_R2.fastq.gz NA ERR14893172_1.fastq.gz ERR14893172_2.fastq.gz NA +OSU-1 OSU-1_OSU-1 1 4 PE Homo sapiens (modern human) double half /OSU-1_OSU-1_L1_R1.fastq.gz /OSU-1_OSU-1_L1_R2.fastq.gz NA ERR14893176_1.fastq.gz ERR14893176_2.fastq.gz NA +RAM-13 RAM-13_RAM-13 1 4 PE Homo sapiens (modern human) double half /RAM-13_RAM-13_L1_R1.fastq.gz /RAM-13_RAM-13_L1_R2.fastq.gz NA ERR14893180_1.fastq.gz ERR14893180_2.fastq.gz NA +RLS-1 RLS-1_RLS-1 1 4 PE Homo sapiens (modern human) double half /RLS-1_RLS-1_L1_R1.fastq.gz /RLS-1_RLS-1_L1_R2.fastq.gz NA ERR14893181_1.fastq.gz ERR14893181_2.fastq.gz NA +TAR-184 TAR-184_TAR-184 1 4 PE Homo sapiens (modern human) double half /TAR-184_TAR-184_L1_R1.fastq.gz /TAR-184_TAR-184_L1_R2.fastq.gz NA ERR14893183_1.fastq.gz ERR14893183_2.fastq.gz NA +DZS-42 DZS-42_DZS-42 1 4 PE Homo sapiens (modern human) double half /DZS-42_DZS-42_L1_R1.fastq.gz /DZS-42_DZS-42_L1_R2.fastq.gz NA ERR14893192_1.fastq.gz ERR14893192_2.fastq.gz NA +DZS-48 DZS-48_DZS-48 1 4 PE Homo sapiens (modern human) double half /DZS-48_DZS-48_L1_R1.fastq.gz /DZS-48_DZS-48_L1_R2.fastq.gz NA ERR14893195_1.fastq.gz ERR14893195_2.fastq.gz NA +FKD-150 FKD-150_FKD-150 1 4 PE Homo sapiens (modern human) double half /FKD-150_FKD-150_L1_R1.fastq.gz /FKD-150_FKD-150_L1_R2.fastq.gz NA ERR14893198_1.fastq.gz ERR14893198_2.fastq.gz NA +MEH-2p MEH-2p_MEH-2p 1 4 PE Homo sapiens (modern human) double half /MEH-2p_MEH-2p_L1_R1.fastq.gz /MEH-2p_MEH-2p_L1_R2.fastq.gz NA ERR14893199_1.fastq.gz ERR14893199_2.fastq.gz NA +CSU2-39 CSU2-39_CSU2-39 1 4 PE Homo sapiens (modern human) double half /CSU2-39_CSU2-39_L1_R1.fastq.gz /CSU2-39_CSU2-39_L1_R2.fastq.gz NA ERR14893200_1.fastq.gz ERR14893200_2.fastq.gz NA +HVF-2 HVF-2_HVF-2 1 4 PE Homo sapiens (modern human) double half /HVF-2_HVF-2_L1_R1.fastq.gz /HVF-2_HVF-2_L1_R2.fastq.gz NA ERR14893202_1.fastq.gz ERR14893202_2.fastq.gz NA +HVF-4 HVF-4_HVF-4 1 4 PE Homo sapiens (modern human) double half /HVF-4_HVF-4_L1_R1.fastq.gz /HVF-4_HVF-4_L1_R2.fastq.gz NA ERR14893204_1.fastq.gz ERR14893204_2.fastq.gz NA +MIJ-4 MIJ-4_MIJ-4 1 4 PE Homo sapiens (modern human) double half /MIJ-4_MIJ-4_L1_R1.fastq.gz /MIJ-4_MIJ-4_L1_R2.fastq.gz NA ERR14893213_1.fastq.gz ERR14893213_2.fastq.gz NA +AND-145 AND-145_AND-145 1 4 PE Homo sapiens (modern human) double half /AND-145_AND-145_L1_R1.fastq.gz /AND-145_AND-145_L1_R2.fastq.gz NA ERR14893218_1.fastq.gz ERR14893218_2.fastq.gz NA +AND-177 AND-177_AND-177 1 4 PE Homo sapiens (modern human) double half /AND-177_AND-177_L1_R1.fastq.gz /AND-177_AND-177_L1_R2.fastq.gz NA ERR14893219_1.fastq.gz ERR14893219_2.fastq.gz NA +RAK-115 RAK-115_RAK-115 1 4 PE Homo sapiens (modern human) double half /RAK-115_RAK-115_L1_R1.fastq.gz /RAK-115_RAK-115_L1_R2.fastq.gz NA ERR14893227_1.fastq.gz ERR14893227_2.fastq.gz NA +RAK-136 RAK-136_RAK-136 1 4 PE Homo sapiens (modern human) double half /RAK-136_RAK-136_L1_R1.fastq.gz /RAK-136_RAK-136_L1_R2.fastq.gz NA ERR14893228_1.fastq.gz ERR14893228_2.fastq.gz NA +RAK-211 RAK-211_RAK-211 1 4 PE Homo sapiens (modern human) double half /RAK-211_RAK-211_L1_R1.fastq.gz /RAK-211_RAK-211_L1_R2.fastq.gz NA ERR14893229_1.fastq.gz ERR14893229_2.fastq.gz NA +HGY-14 HGY-14_HGY-14 1 4 PE Homo sapiens (modern human) double half /HGY-14_HGY-14_L1_R1.fastq.gz /HGY-14_HGY-14_L1_R2.fastq.gz NA ERR14893231_1.fastq.gz ERR14893231_2.fastq.gz NA +KFH-2 KFH-2_KFH-2 1 4 PE Homo sapiens (modern human) double half /KFH-2_KFH-2_L1_R1.fastq.gz /KFH-2_KFH-2_L1_R2.fastq.gz NA ERR14893233_1.fastq.gz ERR14893233_2.fastq.gz NA +KFH-3 KFH-3_KFH-3 1 4 PE Homo sapiens (modern human) double half /KFH-3_KFH-3_L1_R1.fastq.gz /KFH-3_KFH-3_L1_R2.fastq.gz NA ERR14893234_1.fastq.gz ERR14893234_2.fastq.gz NA +KDS-148 KDS-148_KDS-148 1 4 PE Homo sapiens (modern human) double half /KDS-148_KDS-148_L1_R1.fastq.gz /KDS-148_KDS-148_L1_R2.fastq.gz NA ERR14893237_1.fastq.gz ERR14893237_2.fastq.gz NA +KDS-260 KDS-260_KDS-260 1 4 PE Homo sapiens (modern human) double half /KDS-260_KDS-260_L1_R1.fastq.gz /KDS-260_KDS-260_L1_R2.fastq.gz NA ERR14893238_1.fastq.gz ERR14893238_2.fastq.gz NA +MDH-28 MDH-28_MDH-28 1 4 PE Homo sapiens (modern human) double half /MDH-28_MDH-28_L1_R1.fastq.gz /MDH-28_MDH-28_L1_R2.fastq.gz NA ERR14893239_1.fastq.gz ERR14893239_2.fastq.gz NA +MDH-82 MDH-82_MDH-82 1 4 PE Homo sapiens (modern human) double half /MDH-82_MDH-82_L1_R1.fastq.gz /MDH-82_MDH-82_L1_R2.fastq.gz NA ERR14893241_1.fastq.gz ERR14893241_2.fastq.gz NA +MDH-84 MDH-84_MDH-84 1 4 PE Homo sapiens (modern human) double half /MDH-84_MDH-84_L1_R1.fastq.gz /MDH-84_MDH-84_L1_R2.fastq.gz NA ERR14893242_1.fastq.gz ERR14893242_2.fastq.gz NA +MDH-462 MDH-462_MDH-462 1 4 PE Homo sapiens (modern human) double half /MDH-462_MDH-462_L1_R1.fastq.gz /MDH-462_MDH-462_L1_R2.fastq.gz NA ERR14893258_1.fastq.gz ERR14893258_2.fastq.gz NA +MDH-514 MDH-514_MDH-514 1 4 PE Homo sapiens (modern human) double half /MDH-514_MDH-514_L1_R1.fastq.gz /MDH-514_MDH-514_L1_R2.fastq.gz NA ERR14893261_1.fastq.gz ERR14893261_2.fastq.gz NA +MDH-656 MDH-656_MDH-656 1 4 PE Homo sapiens (modern human) double half /MDH-656_MDH-656_L1_R1.fastq.gz /MDH-656_MDH-656_L1_R2.fastq.gz NA ERR14893264_1.fastq.gz ERR14893264_2.fastq.gz NA +PLG-4 PLG-4_PLG-4 1 4 PE Homo sapiens (modern human) double half /PLG-4_PLG-4_L1_R1.fastq.gz /PLG-4_PLG-4_L1_R2.fastq.gz NA ERR14893267_1.fastq.gz ERR14893267_2.fastq.gz NA +ZZ-1 ZZ-1_ZZ-1 1 4 PE Homo sapiens (modern human) double half /ZZ-1_ZZ-1_L1_R1.fastq.gz /ZZ-1_ZZ-1_L1_R2.fastq.gz NA ERR14893269_1.fastq.gz ERR14893269_2.fastq.gz NA +MM2-245 MM2-245_MM2-245 1 4 PE Homo sapiens (modern human) double half /MM2-245_MM2-245_L1_R1.fastq.gz /MM2-245_MM2-245_L1_R2.fastq.gz NA ERR14893274_1.fastq.gz ERR14893274_2.fastq.gz NA +OFU-27 OFU-27_OFU-27 1 4 PE Homo sapiens (modern human) double half /OFU-27_OFU-27_L1_R1.fastq.gz /OFU-27_OFU-27_L1_R2.fastq.gz NA ERR14893277_1.fastq.gz ERR14893277_2.fastq.gz NA +OFU-93 OFU-93_OFU-93 1 4 PE Homo sapiens (modern human) double half /OFU-93_OFU-93_L1_R1.fastq.gz /OFU-93_OFU-93_L1_R2.fastq.gz NA ERR14893278_1.fastq.gz ERR14893278_2.fastq.gz NA +SPT-23 SPT-23_SPT-23 1 4 PE Homo sapiens (modern human) double half /SPT-23_SPT-23_L1_R1.fastq.gz /SPT-23_SPT-23_L1_R2.fastq.gz NA ERR14893281_1.fastq.gz ERR14893281_2.fastq.gz NA +TIV-6 TIV-6_TIV-6 1 4 PE Homo sapiens (modern human) double half /TIV-6_TIV-6_L1_R1.fastq.gz /TIV-6_TIV-6_L1_R2.fastq.gz NA ERR14893288_1.fastq.gz ERR14893288_2.fastq.gz NA +TIV-17 TIV-17_TIV-17 1 4 PE Homo sapiens (modern human) double half /TIV-17_TIV-17_L1_R1.fastq.gz /TIV-17_TIV-17_L1_R2.fastq.gz NA ERR14893291_1.fastq.gz ERR14893291_2.fastq.gz NA +KM-1005 KM-1005_KM-1005 1 4 PE Homo sapiens (modern human) double half /KM-1005_KM-1005_L1_R1.fastq.gz /KM-1005_KM-1005_L1_R2.fastq.gz NA ERR14893293_1.fastq.gz ERR14893293_2.fastq.gz NA +KM-3679 KM-3679_KM-3679 1 4 PE Homo sapiens (modern human) double half /KM-3679_KM-3679_L1_R1.fastq.gz /KM-3679_KM-3679_L1_R2.fastq.gz NA ERR14893294_1.fastq.gz ERR14893294_2.fastq.gz NA +NKT-32 NKT-32_NKT-32 1 4 PE Homo sapiens (modern human) double half /NKT-32_NKT-32_L1_R1.fastq.gz /NKT-32_NKT-32_L1_R2.fastq.gz NA ERR14893303_1.fastq.gz ERR14893303_2.fastq.gz NA +CSK-25 CSK-25_CSK-25 1 4 PE Homo sapiens (modern human) double half /CSK-25_CSK-25_L1_R1.fastq.gz /CSK-25_CSK-25_L1_R2.fastq.gz NA ERR14893307_1.fastq.gz ERR14893307_2.fastq.gz NA +CSK-61 CSK-61_CSK-61 1 4 PE Homo sapiens (modern human) double half /CSK-61_CSK-61_L1_R1.fastq.gz /CSK-61_CSK-61_L1_R2.fastq.gz NA ERR14893308_1.fastq.gz ERR14893308_2.fastq.gz NA +CSK-101 CSK-101_CSK-101 1 4 PE Homo sapiens (modern human) double half /CSK-101_CSK-101_L1_R1.fastq.gz /CSK-101_CSK-101_L1_R2.fastq.gz NA ERR14893309_1.fastq.gz ERR14893309_2.fastq.gz NA +CSK-135 CSK-135_CSK-135 1 4 PE Homo sapiens (modern human) double half /CSK-135_CSK-135_L1_R1.fastq.gz /CSK-135_CSK-135_L1_R2.fastq.gz NA ERR14893312_1.fastq.gz ERR14893312_2.fastq.gz NA +CSK-137 CSK-137_CSK-137 1 4 PE Homo sapiens (modern human) double half /CSK-137_CSK-137_L1_R1.fastq.gz /CSK-137_CSK-137_L1_R2.fastq.gz NA ERR14893313_1.fastq.gz ERR14893313_2.fastq.gz NA +VIG-94-1 VIG-94-1_VIG-94-1 1 4 PE Homo sapiens (modern human) double half /VIG-94-1_VIG-94-1_L1_R1.fastq.gz /VIG-94-1_VIG-94-1_L1_R2.fastq.gz NA ERR14893325_1.fastq.gz ERR14893325_2.fastq.gz NA +PLG-1 PLG-1_PLG-1 1 4 PE Homo sapiens (modern human) double half /PLG-1_PLG-1_L1_R1.fastq.gz /PLG-1_PLG-1_L1_R2.fastq.gz NA ERR14893266_1.fastq.gz ERR14893266_2.fastq.gz NA +PLG-5 PLG-5_PLG-5 1 4 PE Homo sapiens (modern human) double half /PLG-5_PLG-5_L1_R1.fastq.gz /PLG-5_PLG-5_L1_R2.fastq.gz NA ERR14893268_1.fastq.gz ERR14893268_2.fastq.gz NA +CSO-502 CSO-502_CSO-502 1 4 PE Homo sapiens (modern human) double half /CSO-502_CSO-502_L1_R1.fastq.gz /CSO-502_CSO-502_L1_R2.fastq.gz NA ERR14893270_1.fastq.gz ERR14893270_2.fastq.gz NA +CSO-526 CSO-526_CSO-526 1 4 PE Homo sapiens (modern human) double half /CSO-526_CSO-526_L1_R1.fastq.gz /CSO-526_CSO-526_L1_R2.fastq.gz NA ERR14893272_1.fastq.gz ERR14893272_2.fastq.gz NA +OFU-15 OFU-15_OFU-15 1 4 PE Homo sapiens (modern human) double half /OFU-15_OFU-15_L1_R1.fastq.gz /OFU-15_OFU-15_L1_R2.fastq.gz NA ERR14893275_1.fastq.gz ERR14893275_2.fastq.gz NA +OFU-26 OFU-26_OFU-26 1 4 PE Homo sapiens (modern human) double half /OFU-26_OFU-26_L1_R1.fastq.gz /OFU-26_OFU-26_L1_R2.fastq.gz NA ERR14893276_1.fastq.gz ERR14893276_2.fastq.gz NA +OFU-138 OFU-138_OFU-138 1 4 PE Homo sapiens (modern human) double half /OFU-138_OFU-138_L1_R1.fastq.gz /OFU-138_OFU-138_L1_R2.fastq.gz NA ERR14893279_1.fastq.gz ERR14893279_2.fastq.gz NA +OFU-168 OFU-168_OFU-168 1 4 PE Homo sapiens (modern human) double half /OFU-168_OFU-168_L1_R1.fastq.gz /OFU-168_OFU-168_L1_R2.fastq.gz NA ERR14893280_1.fastq.gz ERR14893280_2.fastq.gz NA +TMA-2 TMA-2_TMA-2 1 4 PE Homo sapiens (modern human) double half /TMA-2_TMA-2_L1_R1.fastq.gz /TMA-2_TMA-2_L1_R2.fastq.gz NA ERR14893282_1.fastq.gz ERR14893282_2.fastq.gz NA +TMA-9 TMA-9_TMA-9 1 4 PE Homo sapiens (modern human) double half /TMA-9_TMA-9_L1_R1.fastq.gz /TMA-9_TMA-9_L1_R2.fastq.gz NA ERR14893284_1.fastq.gz ERR14893284_2.fastq.gz NA +TMA-36 TMA-36_TMA-36 1 4 PE Homo sapiens (modern human) double half /TMA-36_TMA-36_L1_R1.fastq.gz /TMA-36_TMA-36_L1_R2.fastq.gz NA ERR14893286_1.fastq.gz ERR14893286_2.fastq.gz NA +TIV-13 TIV-13_TIV-13 1 4 PE Homo sapiens (modern human) double half /TIV-13_TIV-13_L1_R1.fastq.gz /TIV-13_TIV-13_L1_R2.fastq.gz NA ERR14893290_1.fastq.gz ERR14893290_2.fastq.gz NA +KM-156 KM-156_KM-156 1 4 PE Homo sapiens (modern human) double half /KM-156_KM-156_L1_R1.fastq.gz /KM-156_KM-156_L1_R2.fastq.gz NA ERR14893295_1.fastq.gz ERR14893295_2.fastq.gz NA +KM-199 KM-199_KM-199 1 4 PE Homo sapiens (modern human) double half /KM-199_KM-199_L1_R1.fastq.gz /KM-199_KM-199_L1_R2.fastq.gz NA ERR14893296_1.fastq.gz ERR14893296_2.fastq.gz NA +KSZN-10321 KSZN-10321_KSZN-10321 1 4 PE Homo sapiens (modern human) double half /KSZN-10321_KSZN-10321_L1_R1.fastq.gz /KSZN-10321_KSZN-10321_L1_R2.fastq.gz NA ERR14893297_1.fastq.gz ERR14893297_2.fastq.gz NA +NKL-157 NKL-157_NKL-157 1 4 PE Homo sapiens (modern human) double half /NKL-157_NKL-157_L1_R1.fastq.gz /NKL-157_NKL-157_L1_R2.fastq.gz NA ERR14893301_1.fastq.gz ERR14893301_2.fastq.gz NA +NKT-20 NKT-20_NKT-20 1 4 PE Homo sapiens (modern human) double half /NKT-20_NKT-20_L1_R1.fastq.gz /NKT-20_NKT-20_L1_R2.fastq.gz 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Any further local tweaks to the +## TSV before running eager should be added below that in the form of bash +## commands to aid in reproducibility. + +## usage tsv_patch.sh + +local_data_dir="$(readlink -f ${1})" +input_tsv="$(readlink -f ${2})" +output_tsv="$(dirname ${local_data_dir})/$(basename -s ".tsv" ${input_tsv}).finalised.tsv" +columns_to_keep=("Sample_Name" "Library_ID" "Lane" "Colour_Chemistry" "SeqType" "Organism" "Strandedness" "UDG_Treatment" "R1" "R2" "BAM") +source $(readlink -f ${3}) ## Path to helper function script should be provided as 3rd argument. https://github.com/poseidon-framework/poseidon-eager/blob/main/scripts/source_me.sh + +## Index non-proliferated columns and exclude them from the finalised TSV +cut_selector='' +tsv_header=($(head -n1 ${input_tsv})) +for col_name in ${columns_to_keep[@]}; do + let idx=$(get_index_of ${col_name} "${columns_to_keep[@]}")+1 ## awk uses 1-based indexing + if [[ ! ${idx} -eq -1 ]]; then + cut_selector+="${idx}," + fi +done + +## Remove added columns, and put columns in right order +cut -f ${cut_selector%,} ${input_tsv} > ${output_tsv} +sed -i -e "s||${local_data_dir}|g" ${output_tsv} + +## Any further commands to edit the file before finalisation should be added below as shown +# sed -ie 's/replace_this/with_this/g' ${output_tsv} + +## Keep track of versions +version_file="$(dirname ${input_tsv})/script_versions.txt" +## Remove versions from older run if there +grep -v -F -e "$(basename ${0})" -e "source_me.sh for final TSV" ${version_file} >${version_file}.new +## Then add new versions +echo -e "$(basename ${0}):\t${VERSION}" >> ${version_file}.new +echo -e "source_me.sh for final TSV:\t${HELPER_FUNCTION_VERSION}" >>${version_file}.new +mv ${version_file}.new ${version_file} diff --git a/packages/2025_Schuetz_Sarmatians/script_versions.txt b/packages/2025_Schuetz_Sarmatians/script_versions.txt new file mode 100644 index 0000000..13ace45 --- /dev/null +++ b/packages/2025_Schuetz_Sarmatians/script_versions.txt @@ -0,0 +1,2 @@ +create_eager_input.sh: 0.5.1 +source_me.sh for initial TSV: 0.5.2