File tree Expand file tree Collapse file tree 2 files changed +4
-5
lines changed
Expand file tree Collapse file tree 2 files changed +4
-5
lines changed Original file line number Diff line number Diff line change @@ -69,7 +69,7 @@ USAGE-BEGIN
6969-->
7070```
7171Program: prophasm (a greedy assembler for k-mer set compression)
72- Version: 0.1.0
72+ Version: 0.1.1
7373Contact: Karel Brinda <kbrinda@hsph.harvard.edu>
7474
7575Usage: prophasm [options]
@@ -92,7 +92,6 @@ Command-line parameters:
9292Note that '-' can be used for standard input/output.
9393
9494```
95-
9695<!-- -
9796USAGE-END
9897-->
@@ -115,7 +114,7 @@ def extend_simplitig_forward (K, simplitig):
115114 S.remove (reverse_complement (kmer))
116115 break
117116 return S, s
118-
117+
119118def get_maximal_simplitig (K , initial_kmer ):
120119 simplitig = initial_kmer
121120 K.remove (initial_kmer)
@@ -124,7 +123,7 @@ def get_maximal_simplitig (K, initial_kmer):
124123 simplitig = reverse_completent (simplitig)
125124 K, simplitig = extend_simplitig_forward (K, simplitig)
126125 return K, simplitig
127-
126+
128127def compute_simplitigs (kmers ):
129128 K = set ()
130129 for kmer in kmers:
Original file line number Diff line number Diff line change 1- #define VERSION "0.1.0 "
1+ #define VERSION "0.1.1 "
22
You can’t perform that action at this time.
0 commit comments