add source

Author: rasbt

proflex/AUTHORS

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+
+     AUTHORS
+  --=========--
+
+This program was originally developed by:-
+
+Donald J. Jacobs,
+Andrew J. Rader, 
+Brandon M. Hespenheide,
+Leslie A. Kuhn, and 
+M. F. Thorpe.
+
+Any questions about use or distribution should be directed to
+the e-mail address 'proflex@sol.bch.msu.edu' 
+or to Leslie Kuhn:    
+
+Telephone : +1 (517) 353-8547
+Address   : Protein Structural Analysis and Design  Laboratory
+            502C Biochemistry Building
+            Michigan State University
+            East Lansing, MI 48824-1319
+            USA
+

proflex/COPYING

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+This is the license file for the MSU ProFlex and associated programs.
+
+Any questions about use or distribution should be directed to
+the e-mail address 'proflex@sol.bch.msu.edu'
+or to Leslie Kuhn:
+
+Telephone : +1 (517) 353-8547
+Address   : Protein Structural Analysis and Design  Laboratory
+            502C Biochemistry Building
+            Michigan State University
+            East Lansing, MI 48824-1319
+            USA
+
+---------------------------------------------------------------------
+All materials contained in this directory and subdirectories are
+   Copyright (C) 1997-2008 Michigan State University.
+
+This program is free software; you can redistribute it to academic users only,
+and/or modify it under the terms of the GNU General Public License (GPL), version 2
+as published by the Free Software Foundation.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software
+Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA,
+or see http://www.gnu.org/licenses/gpl.txt
+---------------------------------------------------------------------
+

proflex/GNU_GPL

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+################################################################################
+#  MSU ProFlex, formerly called FIRST, is a software developed to predict and  #
+#  analyze protein flexibility.                                                #
+#  This source file is a part of MSU ProFlex.                                  #
+#                                                                              #
+#  Copyright (C) 1997 - 2008, Michigan State University.                       #
+#                                                                              #
+#  This program is free software; you can redistribute to academic users only, #
+#  it and/or modify it under the terms of the GNU General Public License,      #
+#  version 2, as published by the Free Software Foundation.                    #
+#                                                                              #
+#  This program is distributed in the hope that it will be useful,             #
+#  but WITHOUT ANY WARRANTY; without even the implied warranty of              # 
+#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the               #
+#  GNU General Public License for more details.                                #
+#                                                                              #
+#  You should have received a copy of the GNU General Public License           #
+#  along with this program; if not, write to the Free Software                 #
+#  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA,  #
+#  or see http://www.gnu.org/licenses/gpl.txt                                  #
+################################################################################
+
+#This is a top level makefile to execute the makefiles in the
+# subdirectories.
+
+all: bindir
+	(cd ./prog/first/src/c++; make)
+	(cd ./prog/first/src/fortran; make)
+	(cd ./prog/hbdilute/src; make )
+	(cd ./util/; make )
+clean:
+	(cd ./prog/first/src/c++; make clean)
+	(cd ./prog/first/src/fortran; make clean)
+	(cd ./prog/hbdilute/src; make clean)
+	(cd ./util/; make clean )
+	rm -rf ./bin
+
+bindir:
+	#creates a bin folder in the proflex directory that contains links to all executables
+	mkdir -p bin
+	ln -s ${PROFLEX_HOME}/first/bin/proflex bin/proflex
+	ln -s ${PROFLEX_HOME}/hbdilute/bin/hbdilute bin/hbdilute
+	ln -s ${PROFLEX_HOME}/../util/flex_index bin/flex_index
+
+ 

proflex/Makefile

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+This is the license file for the MSU ProFlex and associated programs.
+
+Any questions about use or distribution should be directed to
+the e-mail address 'kuhnlab@msu.edu'
+or to Leslie Kuhn:
+
+Telephone : +1 (517) 353-8547
+Address   : Protein Structural Analysis and Design  Laboratory
+            502C Biochemistry Building
+            Michigan State University
+            East Lansing, MI 48824-1319
+            USA
+
+---------------------------------------------------------------------
+All materials contained in this directory and subdirectories are
+   Copyright (C) 1997-2008 Michigan State University.
+
+This program is free software; you can redistribute it to academic users only,
+and/or modify it under the terms of the GNU General Public License (GPL), version 2
+as published by the Free Software Foundation.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program; if not, write to the Free Software
+Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA,
+or see http://www.gnu.org/licenses/gpl.txt
+---------------------------------------------------------------------
+