refactor: remove reed dependency, seed system, and apps

Lotus is now purely a world runtime without:
- TypeScript transpilation (now reed's responsibility)
- Seed system (app data, not framework)
- notes-server and filebrowser-server apps (app layer, not core)

Removed:
- crates/syntax/typescript (used reed for TS parsing)
- crates/lotus-core/src/seed.rs (TypeScript entity seeding)
- crates/apps/ (notes-server, filebrowser-server)
- lotus transpile CLI command
- All rhizome-reed-* dependencies

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

Author: pterror

Cargo.toml

@@ -7,7 +7,6 @@ members = [
     "crates/lotus-runtime",
     "crates/lotus-plugin-abi",
     "crates/lotus-cli",
-    "crates/syntax/typescript",
     "crates/runtime/luajit",
     "crates/transport/websocket-jsonrpc",
     "crates/plugins/procgen",
@@ -19,8 +18,6 @@ members = [
     "crates/plugins/memory",
     "crates/plugins/diffusers",
     "crates/plugins/cloud",
-    "crates/apps/notes-server",
-    "crates/apps/filebrowser-server",
     "xtask",
 ]
 
@@ -67,14 +64,8 @@ rhizome-lotus-core = { path = "crates/lotus-core" }
 rhizome-lotus-runtime = { path = "crates/lotus-runtime" }
 rhizome-lotus-plugin-abi = { path = "crates/lotus-plugin-abi" }
 rhizome-lotus-transport-websocket-jsonrpc = { path = "crates/transport/websocket-jsonrpc" }
-rhizome-lotus-syntax-typescript = { path = "crates/syntax/typescript" }
 rhizome-lotus-runtime-luajit = { path = "crates/runtime/luajit" }
 
-# Reed (translation layer)
-rhizome-reed-ir = { path = "../reed/crates/reed-ir" }
-rhizome-reed-sexpr = { path = "../reed/crates/reed-sexpr" }
-rhizome-reed-read-ts = { path = "../reed/crates/readers/reed-read-ts" }
-
 # Minimize debug build size
 [profile.dev]
 debug = 0