@@ -86,6 +86,17 @@ chat$ask("Do a heatmap instead")
8686
8787![ ] ( ./man/figures/scplotter-chat2.png )
8888
89+ ## Credits
90+
91+ ` scplotter ` is built upon the following fantastic packages:
92+
93+ - [ ` plotthis ` ] [ 1 ] for the core plotting functions.
94+ - [ ` tidyprompt ` ] [ 21 ] for the LLM interface.
95+ - [ ` Seurat ` ] [ 25 ] for the Seurat object support.
96+ - [ ` LIANA ` ] [ 26 ] for the cell-cell communication analysis.
97+ - [ ` scRepertoire ` ] [ 27 ] for the TCR/BCR repertoire analysis.
98+ - [ ` Giotto ` ] [ 28 ] for the spatial data analysis.
99+
89100
90101[ 1 ] : https://github.com/pwwang/plotthis
91102[ 2 ] : https://pwwang.github.io/scplotter/reference/CellVelocityPlot.html
@@ -107,6 +118,11 @@ chat$ask("Do a heatmap instead")
107118[ 18 ] : https://pwwang.github.io/scplotter/reference/ClonalGeneUsagePlot.html
108119[ 19 ] : https://pwwang.github.io/scplotter/reference/ClonalDiversityPlot.html
109120[ 20 ] : https://pwwang.github.io/scplotter/reference/ClonalPositionalPlot.html
121+ [ 21 ] : https://github.com/tjarkvandemerwe/tidyprompt
110122[ 22 ] : https://pwwang.github.io/scplotter/reference/ClonalDynamicsPlot.html
111123[ 23 ] : https://pwwang.github.io/scplotter/reference/SpatDimPlot.html
112124[ 24 ] : https://pwwang.github.io/scplotter/reference/SpatFeaturePlot.html
125+ [ 25 ] : https://satijalab.org/seurat/
126+ [ 26 ] : https://github.com/saezlab/liana-py
127+ [ 27 ] : https://github.com/BorchLab/scRepertoire
128+ [ 28 ] : https://drieslab.github.io/Giotto_website/
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