Merge pull request #217 from kunwuz/main

Update BOSS and GRaSP a bit to always use BIC_from_cov if specified as BIC

Author: kunwuz

causallearn/search/PermutationBased/BOSS.py

@@ -95,11 +95,11 @@ def boss(
         )
     elif score_func == "local_score_BIC":
         # SEM BIC score
-        warnings.warn("Please use 'local_score_BIC_from_cov' instead")
+        warnings.warn("Using 'local_score_BIC_from_cov' instead for efficiency")
         if parameters is None:
             parameters = {"lambda_value": 2}
         localScoreClass = LocalScoreClass(
-            data=X, local_score_fun=local_score_BIC, parameters=parameters
+            data=X, local_score_fun=local_score_BIC_from_cov, parameters=parameters
         )
     elif score_func == "local_score_BIC_from_cov":
         # SEM BIC score

causallearn/search/PermutationBased/GRaSP.py

@@ -153,11 +153,11 @@ def grasp(
         )
     elif score_func == "local_score_BIC":
         # SEM BIC score
-        warnings.warn("Please use 'local_score_BIC_from_cov' instead")
+        warnings.warn("Using 'local_score_BIC_from_cov' instead for efficiency")
         if parameters is None:
             parameters = {"lambda_value": 2}
         localScoreClass = LocalScoreClass(
-            data=X, local_score_fun=local_score_BIC, parameters=parameters
+            data=X, local_score_fun=local_score_BIC_from_cov, parameters=parameters
         )
     elif score_func == "local_score_BIC_from_cov":
         # SEM BIC score

setup.py

@@ -3,7 +3,7 @@
 with open('README.md', 'r') as fh:
     README = fh.read()
 
-VERSION = '0.1.3.9'
+VERSION = '0.1.4.0'
 
 setuptools.setup(
     name='causal-learn',