Merge pull request #107 from lwasser/add-coverage

Fix: add test coverage

Author: willingc

.github/workflows/run-tests.yml

@@ -20,4 +20,10 @@ jobs:
       - name: Run tests
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: hatch run test:run-tests
+        run: hatch run test:run-report
+      - name: Upload coverage reports to Codecov
+        uses: codecov/[email protected]
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          verbose: true
+          files: ./coverage.xml

.gitignore

@@ -9,6 +9,8 @@ all_contribs_dict.pickle
 .idea/
 .token
 __pycache__
+.coverage
+coverage.xml
 
 
 # Distribution / packaging

CHANGELOG.md

@@ -7,6 +7,7 @@
 - Enh: Use `hatch_vcs` for dynamic versioning (@lwasser, #82)
 - Fix: migrate to pytest for tests and setup hatch scripts (#89, @lwasser)
 - Add: Partner support to package (#92, @lwasser)
+- Add: Code coverage setup (#97, @lwasser)
 - Fix: Add validation step to categories attr in pydantic model (#105, @lwasser)
 
 ## [v0.15](https://github.com/pyOpenSci/pyosMeta/releases/tag/v0.15)

README.md

@@ -1,29 +1,33 @@
-# pyosmeta (was: update-web-metadata)
+# pyosmeta
 
 [![PyPI](https://img.shields.io/pypi/v/pyosmeta.svg)](https://pypi.org/project/pyosmeta/)
 [![.github/workflows/test-run-script.yml](https://github.com/pyOpenSci/update-web-metadata/actions/workflows/test-run-script.yml/badge.svg)](https://github.com/pyOpenSci/update-web-metadata/actions/workflows/test-run-script.yml)
 [![License](https://img.shields.io/badge/license-MIT-blue.svg)](https://github.com/pyopensci/update-web-metadata/blob/master/LICENSE)
+[![codecov](https://codecov.io/gh/pyOpenSci/pyosMeta/graph/badge.svg?token=GOXKA8Z44X)](https://codecov.io/gh/pyOpenSci/pyosMeta)
 
 ## Description
 
 **pyosmeta** provides the tools and scripts used to manage [pyOpenSci](https://pyopensci.org)'s contributor and peer
 review metadata.
 This repo contains a small module and several CLI scripts, including:
-  - `parse-history`
-  - `update-contributors`
-  - `update-reviews`
-  - `update-review-teams`
 
-*Since pyOpenSci uses this tool for its website, we expect this package to have infrequent releases.*
+- `parse-history`
+- `update-contributors`
+- `update-reviews`
+- `update-review-teams`
+
+_Since pyOpenSci uses this tool for its website, we expect this package to have infrequent releases._
 
 ## Installation
 
 Using pip:
+
 ```
 pip install pyosmeta
 ```
 
 Using conda:
+
 ```
 conda install pyosmeta
 ```
@@ -32,7 +36,7 @@ conda install pyosmeta
 
 See [CONTRIBUTING.md](./CONTRIBUTING.md).
 
-*Note: this section will be rewritten to be more user focused.*
+_Note: this section will be rewritten to be more user focused._
 
 ## Contributors ✨
 

development.md

@@ -6,12 +6,31 @@ pyosMeta uses hatch and hatchling as it's build back end.
 
 ## Running tests
 
-To install tests:
+We use Hatch scripts to automate workflows. 🚀
 
-`python -m pip install ".[tests]"`
+To run tests there is a single hatch environment parsed with three
+script options that you can chose to run.
 
-We use Hatch scripts to automate workflows.
+1. To run only tests with a code coverage report out in the terminal use:
 
-To run tests, you can use:
+   `hatch run test:run-coverage`
 
-`hatch run test:run-tests`
+2. To run tests without code coverage report outs use :
+   `hatch run test:run-coverage`
+
+3. To run tests with an xml report generated use:
+   `hatch run test:run-report`
+
+   The hatch run-report script is the script used in our CI tests action.
+
+### Modify test scripts
+
+To modify how scripts are run, you can look at this section in our
+pyproject.toml file:
+
+```toml
+[tool.hatch.envs.test.scripts]
+run-coverage = "pytest --cov-config=pyproject.toml --cov=pyosmeta --cov=tests/*"
+run-no-cov = "run-coverage --no-cov"
+run-report = "run-coverage --cov-report=xml:coverage.xml"
+```

pyproject.toml

@@ -8,20 +8,20 @@ dynamic = ["version"]
 description = "Tools that update the pyOpenSci contributor and review metadata that is posted on our website"
 authors = [{ name = "Leah Wasser", email = "[email protected]" }]
 maintainers = [
-    { name = "pyOpenSci", email = "[email protected]" }, # Optional
+  { name = "pyOpenSci", email = "[email protected]" }, # Optional
 ]
 classifiers = [
-    "Development Status :: 4 - Beta",
-    "Intended Audience :: Developers",
-    "Topic :: Software Development :: Build Tools",
+  "Development Status :: 4 - Beta",
+  "Intended Audience :: Developers",
+  "Topic :: Software Development :: Build Tools",
 
-    # Pick your license  - we suggest MIT, BSD3 or Apache if you are corporate
-    "License :: OSI Approved :: MIT License",
-    # Specify the Python versions ensuring that you indicate you support Python 3.
-    # this is only for pypi and other metadata associated with your package - for your users to see
-    "Programming Language :: Python :: 3 :: Only", # BE sure to specify that you use python 3.x
-    "Programming Language :: Python :: 3.10",
-    "Programming Language :: Python :: 3.11",
+  # Pick your license  - we suggest MIT, BSD3 or Apache if you are corporate
+  "License :: OSI Approved :: MIT License",
+  # Specify the Python versions ensuring that you indicate you support Python 3.
+  # this is only for pypi and other metadata associated with your package - for your users to see
+  "Programming Language :: Python :: 3 :: Only", # BE sure to specify that you use python 3.x
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
 ]
 dependencies = [
     "pydantic>=2.0",
@@ -56,6 +56,11 @@ update-contributors = "pyosmeta.cli.update_contributors:main"
 update-reviews = "pyosmeta.cli.process_reviews:main"
 update-review-teams = "pyosmeta.cli.update_review_teams:main"
 
+[tool.coverage.run]
+branch = true
+include = ["src/pyosmeta/*"]
+# Don't run coverage on tests directory or version file created by scm
+omit = ["tests/*", "src/pyosmeta/_version.py"]
 
 ### Hatch config ###
 
@@ -64,15 +69,12 @@ version.source = "vcs"
 build.hooks.vcs.version-file = "src/pyosmeta/_version.py"
 
 [tool.hatch.envs.test]
-dependencies = [
-  "pytest",
-  "pytest-cov",
-]
+dependencies = ["pytest", "pytest-cov", "coverage[toml]"]
 
 [tool.hatch.envs.test.scripts]
-#run-coverage = "pytest --cov-config=pyproject.toml --cov=pkg --cov=tests"
-#run = "run-coverage --no-cov"
-run-tests = "pytest"
+run-coverage = "pytest --cov-config=pyproject.toml --cov=pyosmeta --cov=tests/*"
+run-no-cov = "run-coverage --no-cov"
+run-report = "run-coverage --cov-report=xml:coverage.xml"
 
 
 ### Tool configuration ###