build: drop python 3.8 add py3.13 (#671)

* build: add py3.13

* drop py3.8

* less min reqs

* remove test

* remove stardist-napari test

Author: tlambert03

.github/workflows/test_and_deploy.yml

@@ -30,21 +30,21 @@ jobs:
         os: [ubuntu-latest, macos-latest, windows-latest]
         qt: [pyqt6, pyside6]
         include:
-          - python-version: "3.8"
+          - python-version: "3.9"
             os: ubuntu-latest
             qt: pyqt5
-          - python-version: "3.8"
+          - python-version: "3.9"
+            os: ubuntu-latest
+            qt: pyside2
+          - python-version: "3.9"
             os: macos-13
             qt: pyside2
-          - python-version: "3.8"
-            os: windows-latest
-            qt: pyqt5
           - python-version: "3.9"
             os: macos-13
             qt: pyqt5
           - python-version: "3.9"
-            os: ubuntu-latest
-            qt: pyside2
+            os: windows-latest
+            qt: pyqt5
           - python-version: "3.10"
             os: ubuntu-latest
             qt: pyside2
@@ -54,6 +54,12 @@ jobs:
           - python-version: "3.12"
             os: ubuntu-latest
             qt: pyside6
+          - python-version: "3.13"
+            os: ubuntu-latest
+            qt: pyside6
+          - python-version: "3.13"
+            os: windows-latest
+            qt: pyqt6
 
   test-min-reqs:
     name: Test min reqs
@@ -67,7 +73,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11"]
+        python-version: ["3.9", "3.10", "3.11"]
 
   test-pydantic1:
     name: Test pydantic 1
@@ -106,9 +112,6 @@ jobs:
             package-version: "v0.4.19.post1"
             pytest-args: napari/_tests/test_magicgui.py
           - package: hanjinliu/magic-class
-          - package: stardist/stardist-napari
-            package-extras: test
-            pytest-args: stardist_napari
           - package: 4DNucleome/PartSeg
             package-extras: test
             pytest-args: package/tests/test_PartSeg/test_napari_widgets.py

.pre-commit-config.yaml

@@ -18,7 +18,8 @@ repos:
     rev: v0.7.3
     hooks:
       - id: ruff
-        args: ["--fix"]
+        args: ["--fix", "--unsafe-fixes"]
+      - id: ruff-format
 
   - repo: https://github.com/pre-commit/mirrors-mypy
     rev: v1.13.0

docs/examples/demo_widgets/file_dialog.py

@@ -15,6 +15,5 @@ def filepicker(filename=Path("~")) -> Path:
     return filename
 
 
-
 filepicker.filename.changed.connect(print)
 filepicker.show(run=True)

docs/examples/demo_widgets/files_dialog.py

@@ -3,8 +3,8 @@
 A dialog to select multiple files.
 """
 
+from collections.abc import Sequence
 from pathlib import Path
-from typing import Sequence
 
 from magicgui import magicgui
 

docs/examples/demo_widgets/range_slider.py

@@ -3,13 +3,11 @@
 A double ended range slider widget.
 """
 
-from typing import Tuple
-
 from magicgui import magicgui
 
 
 @magicgui(auto_call=True, range_value={"widget_type": "RangeSlider", "max": 500})
-def func(range_value: Tuple[int, int] = (20, 380)):
+def func(range_value: tuple[int, int] = (20, 380)):
     """Double ended range slider."""
     print(range_value)
 

docs/examples/matplotlib/waveform.py

@@ -6,12 +6,12 @@
 from dataclasses import dataclass, field
 from enum import Enum
 from functools import partial
+from typing import Annotated
 
 import matplotlib.pyplot as plt
 import numpy as np
 from matplotlib.backends.backend_qt5agg import FigureCanvas
 from scipy import signal
-from typing_extensions import Annotated
 
 from magicgui import magicgui, register_type, widgets
 

docs/examples/napari/napari_img_math.py

@@ -58,6 +58,7 @@ def image_arithmetic(
     # Add, subtracts, multiplies, or divides to image layers.
     return operation.value(layerA, layerB)
 
+
 # create a viewer and add a couple image layers
 viewer = napari.Viewer()
 viewer.add_image(numpy.random.rand(20, 20), name="Layer 1")
@@ -107,6 +108,7 @@ def image_arithmetic(array1, operation, array2):
 ```python
 from napari.types import ImageData
 
+
 def image_arithmetic(
     layerA: ImageData, operation: Operation, layerB: ImageData
 ) -> ImageData:

docs/examples/napari/napari_parameter_sweep.py

@@ -60,6 +60,7 @@ def gaussian_blur(layer: ImageData, sigma: float = 1.0, mode="nearest") -> Image
     if layer is not None:
         return skimage.filters.gaussian(layer, sigma=sigma, mode=mode)
 
+
 # create a viewer and add some images
 viewer = napari.Viewer()
 viewer.add_image(skimage.data.astronaut().mean(-1), name="astronaut")
@@ -88,9 +89,7 @@ def gaussian_blur(layer: ImageData, sigma: float = 1.0, mode="nearest") -> Image
 the blur radius, and a `mode` that determines how edges are handled.
 
 ```python
-def gaussian_blur(
-    layer: Image, sigma: float = 1, mode="nearest"
-) -> Image:
+def gaussian_blur(layer: Image, sigma: float = 1, mode="nearest") -> Image:
     return filters.gaussian(layer.data, sigma=sigma, mode=mode)
 ```
 
@@ -124,9 +123,7 @@ def gaussian_blur(
     sigma={"widget_type": "FloatSlider", "max": 6},
     mode={"choices": ["reflect", "constant", "nearest", "mirror", "wrap"]},
 )
-def gaussian_blur(
-  layer: ImageData, sigma: float = 1.0, mode="nearest"
-) -> ImageData:
+def gaussian_blur(layer: ImageData, sigma: float = 1.0, mode="nearest") -> ImageData:
     # Apply a gaussian blur to ``layer``.
     if layer is not None:
         return skimage.filters.gaussian(layer, sigma=sigma, mode=mode)
@@ -152,8 +149,8 @@ def gaussian_blur(
 the result of our decorated function anytime it is called.
 
 ```python
-def do_something_with_result(result):
-    ...
+def do_something_with_result(result): ...
+
 
 gaussian_blur.called.connect(do_something_with_result)
 ```

docs/examples/notebooks/magicgui_jupyter.ipynb

@@ -28,6 +28,7 @@
     "\n",
     "use_app(\"ipynb\")\n",
     "\n",
+    "\n",
     "class Medium(Enum):\n",
     "    \"\"\"Enum for various media and their refractive indices.\"\"\"\n",
     "\n",
@@ -38,7 +39,7 @@
     "\n",
     "\n",
     "@magicgui(\n",
-    "    call_button=\"calculate\", result_widget=True, layout='vertical', auto_call=True\n",
+    "    call_button=\"calculate\", result_widget=True, layout=\"vertical\", auto_call=True\n",
     ")\n",
     "def snells_law(aoi=1.0, n1=Medium.Glass, n2=Medium.Water, degrees=True):\n",
     "    \"\"\"Calculate the angle of refraction given two media and an AOI.\"\"\"\n",

docs/examples/notebooks/magicgui_jupyter.py

@@ -11,8 +11,10 @@
 from enum import Enum
 
 from magicgui import magicgui, use_app
+
 use_app("ipynb")
 
+
 class Medium(Enum):
     # Various media and their refractive indices.
     Glass = 1.520
@@ -22,7 +24,7 @@ class Medium(Enum):
 
 
 @magicgui(
-    call_button="calculate", result_widget=True, layout='vertical', auto_call=True
+    call_button="calculate", result_widget=True, layout="vertical", auto_call=True
 )
 def snells_law(aoi=1.0, n1=Medium.Glass, n2=Medium.Water, degrees=True):
     # Calculate the angle of refraction given two media and an angle of incidence.