Merge pull request #5034 from pybamm-team/release/v25.6.0

Release v25.6.0

Author: kratman

.github/workflows/benchmark_on_push.yml

@@ -24,7 +24,7 @@ jobs:
         with:
           persist-credentials: false
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 

.github/workflows/docker.yml

@@ -39,7 +39,7 @@ jobs:
 
 
       - name: Build and push Docker image to Docker Hub
-        uses: docker/build-push-action@471d1dc4e07e5cdedd4c2171150001c434f0b7a4 # v6.15.0
+        uses: docker/build-push-action@1dc73863535b631f98b2378be8619f83b136f4a0 # v6.17.0
         with:
           context: .
           file: scripts/Dockerfile

.github/workflows/lychee_url_checker.yml

@@ -36,7 +36,7 @@ jobs:
 
       # use stable version for now to avoid breaking changes
       - name: Lychee URL checker
-        uses: lycheeverse/lychee-action@1d97d84f0bc547f7b25f4c2170d87d810dc2fb2c # v2.4.0
+        uses: lycheeverse/lychee-action@82202e5e9c2f4ef1a55a3d02563e1cb6041e5332 # v2.4.1
         with:
           # arguments with file types to check
           args: >-

.github/workflows/periodic_benchmarks.yml

@@ -33,7 +33,7 @@ jobs:
           persist-credentials: false
 
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -70,7 +70,7 @@ jobs:
       contents: write
     steps:
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -85,7 +85,7 @@ jobs:
           persist-credentials: false
 
       - name: Download results artifact(s)
-        uses: actions/download-artifact@95815c38cf2ff2164869cbab79da8d1f422bc89e # v4.2.1
+        uses: actions/download-artifact@d3f86a106a0bac45b974a628896c90dbdf5c8093 # v4.3.0
         with:
           path: results
           merge-multiple: true

.github/workflows/publish_pypi.yml

@@ -16,7 +16,7 @@ jobs:
       - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
         with:
           persist-credentials: true
-      - uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+      - uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -39,7 +39,7 @@ jobs:
 
     steps:
       - name: Download artifacts
-        uses: actions/download-artifact@95815c38cf2ff2164869cbab79da8d1f422bc89e # v4.2.1
+        uses: actions/download-artifact@d3f86a106a0bac45b974a628896c90dbdf5c8093 # v4.3.0
         with:
           path: deploy
           merge-multiple: true

.github/workflows/run_benchmarks_over_history.yml

@@ -41,7 +41,7 @@ jobs:
         with:
           persist-credentials: false
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -132,7 +132,7 @@ jobs:
       contents: write
     steps:
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -147,7 +147,7 @@ jobs:
           persist-credentials: false
 
       - name: Download results artifact(s)
-        uses: actions/download-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4.6.2
+        uses: actions/download-artifact@d3f86a106a0bac45b974a628896c90dbdf5c8093 # v4.6.2
         with:
           name: asv_over_history_results
           path: results

.github/workflows/run_periodic_tests.yml

@@ -66,7 +66,7 @@ jobs:
         run: choco install graphviz --version=8.0.5
 
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: ${{ matrix.python-version }}
 
@@ -86,7 +86,7 @@ jobs:
 
       - name: Upload coverage report
         if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
-        uses: codecov/codecov-action@ad3126e916f78f00edff4ed0317cf185271ccc2d # v5.4.2
+        uses: codecov/codecov-action@18283e04ce6e62d37312384ff67231eb8fd56d24 # v5.4.3
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
 
@@ -115,7 +115,7 @@ jobs:
           sudo apt-get install texlive-latex-extra dvipng
 
       - name: Set up Python
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.11
 
@@ -152,7 +152,7 @@ jobs:
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -186,7 +186,7 @@ jobs:
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
       - name: Set up Python 3.12
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 

.github/workflows/scorecard.yml

@@ -65,6 +65,6 @@ jobs:
       # Upload the results to GitHub's code scanning dashboard (optional).
       # Commenting out will disable upload of results to your repo's Code Scanning dashboard
       - name: "Upload to code-scanning"
-        uses: github/codeql-action/upload-sarif@45775bd8235c68ba998cffa5171334d58593da47 # v3.28.15
+        uses: github/codeql-action/upload-sarif@ff0a06e83cb2de871e5a09832bc6a81e7276941f # v3.28.18
         with:
           sarif_file: results.sarif

.github/workflows/test_on_push.yml

@@ -28,7 +28,7 @@ jobs:
         with:
           persist-credentials: false
       - name: Setup Python
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
 
@@ -93,7 +93,7 @@ jobs:
 
       - name: Set up Python ${{ matrix.python-version }}
         id: setup-python
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: ${{ matrix.python-version }}
           cache: 'pip'
@@ -114,7 +114,7 @@ jobs:
 
       - name: Upload coverage report
         if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
-        uses: codecov/codecov-action@ad3126e916f78f00edff4ed0317cf185271ccc2d # v5.4.2
+        uses: codecov/codecov-action@18283e04ce6e62d37312384ff67231eb8fd56d24 # v5.4.3
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
 
@@ -152,7 +152,7 @@ jobs:
 
       - name: Set up Python
         id: setup-python
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.11
           cache: 'pip'
@@ -198,7 +198,7 @@ jobs:
 
       - name: Set up Python 3.12
         id: setup-python
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
           cache: 'pip'
@@ -241,7 +241,7 @@ jobs:
 
       - name: Set up Python 3.12
         id: setup-python
-        uses: actions/setup-python@8d9ed9ac5c53483de85588cdf95a591a75ab9f55 # v5.5.0
+        uses: actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065 # v5.6.0
         with:
           python-version: 3.12
           cache: 'pip'

.gitignore

@@ -86,26 +86,14 @@ pyvenv.cfg
 
 # third party
 third-party
-
-# cmakefiles
-CMakeFiles
-Makefile
-cmake_install.cmake
 *.so
 
-third-party/pybind11
-pybind11/
-
-# Build dependencies/
-KLU_module_deps
-
-# setup
-setup.log
 
 # test
 test.c
 test.json
 .pytest_cache/
+.hypothesis
 
 # tox
 .tox/