Merge pull request #4781 from pybamm-team/release/v25.1.1

Release v25.1.1

Author: kratman

.clang-format

@@ -30,7 +30,7 @@ jobs:
             password: ${{ secrets.DOCKERHUB_TOKEN }}
 
       - name: Build and push Docker image to Docker Hub
-        uses: docker/build-push-action@b32b51a8eda65d6793cd0494a773d4f6bcef32dc # v6.11.0
+        uses: docker/build-push-action@67a2d409c0a876cbe6b11854e3e25193efe4e62d # v6.12.0
         with:
           context: .
           file: scripts/Dockerfile

.github/codecov.yml

@@ -36,7 +36,7 @@ jobs:
         if: matrix.os == 'ubuntu-latest'
         run: |
           sudo apt-get update
-          sudo dot -c
+          sudo apt-get install gfortran gcc graphviz pandoc
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
       - name: Install macOS system dependencies
@@ -100,6 +100,7 @@ jobs:
       - name: Install Linux system dependencies
         run: |
           sudo apt-get update
+          sudo apt-get install graphviz pandoc
           sudo apt-get install texlive-latex-extra dvipng
 
       - name: Set up Python
@@ -132,6 +133,7 @@ jobs:
       - name: Install Linux system dependencies
         run: |
           sudo apt-get update
+          sudo apt-get install gfortran gcc graphviz pandoc
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
       - name: Set up Python 3.12
@@ -161,6 +163,7 @@ jobs:
       - name: Install Linux system dependencies
         run: |
           sudo apt-get update
+          sudo apt-get install gfortran gcc graphviz
           sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
 
       - name: Set up Python 3.12

.github/workflows/docker.yml

@@ -1,11 +1,9 @@
 name: Alert validation repository
 on:
+  workflow_dispatch:
   release:
     types:
       - published
-  push:
-    branches:
-      - develop
 
 jobs:
   build:

.github/workflows/run_periodic_tests.yml

@@ -4,7 +4,7 @@ ci:
 
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.9.1"
+    rev: "v0.9.2"
     hooks:
       - id: ruff
         args: [--fix, --show-fixes]

.github/workflows/update_license.yml

@@ -1,5 +1,16 @@
 # [Unreleased](https://github.com/pybamm-team/PyBaMM/)
 
+# [v25.1.1](https://github.com/pybamm-team/PyBaMM/tree/v25.1.1) - 2025-01-20
+
+## Features
+
+- Added Operators to current and voltage termination events. ([#4770](https://github.com/pybamm-team/PyBaMM/pull/4770))
+
+## Bug fixes
+
+- Fixed a bug which caused the wc-reaction limited SEI model to give
+  incorrect results ([#4774](https://github.com/pybamm-team/PyBaMM/pull/4774))
+
 # [v25.1.0](https://github.com/pybamm-team/PyBaMM/tree/v25.1.0) - 2025-01-14
 
 ## Features

.github/workflows/validation_benchmarks.yml

@@ -24,6 +24,6 @@ keywords:
   - "expression tree"
   - "python"
   - "symbolic differentiation"
-version: "25.1.0"
+version: "25.1.1"
 repository-code: "https://github.com/pybamm-team/PyBaMM"
 title: "Python Battery Mathematical Modelling (PyBaMM)"

.pre-commit-config.yaml

@@ -422,18 +422,13 @@ wherever code is called that uses that citation (for example, in functions or in
 
 ### Installation
 
-Installation of PyBaMM and its dependencies is handled via [pip](https://pip.pypa.io/en/stable/) and [setuptools](http://setuptools.readthedocs.io/). It uses `CMake` to compile C++ extensions using [`pybind11`](https://pybind11.readthedocs.io/en/stable/) and [`casadi`](https://web.casadi.org/). The installation process is described in detail in the [source installation](https://docs.pybamm.org/en/latest/source/user_guide/installation/install-from-source.html) page and is configured through the `CMakeLists.txt` file.
+Installation of PyBaMM and its dependencies is handled via [pip](https://pip.pypa.io/en/stable/)
 
 Configuration files:
-
 ```
-setup.py
 pyproject.toml
-MANIFEST.in
 ```
 
-Note: `MANIFEST.in` is used to include and exclude non-Python files and auxiliary package data for PyBaMM when distributing it. If a file is not included in `MANIFEST.in`, it will not be included in the source distribution (SDist) and subsequently not be included in the binary distribution (wheel).
-
 ### Continuous Integration using GitHub Actions
 
 Each change pushed to the PyBaMM GitHub repository will trigger the test and benchmark suites to be run, using [GitHub Actions](https://github.com/features/actions).