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Hi~ If you are a new starter on PyBaMM, maybe worth playing around some cases in the example folder here. I am not sure whether your thermal system or cooling system require the model to be 3D. As far as I know, PyBaMM is mainly for P2D level on electrochemical model, but can do 2D current collector, like this. This paper seems to have done something you may be interested, but it is PyBaMM coupled with OpenPNM.

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