Merge pull request #840 from pybop-team/25.11

Release v25.11

Author: NicolaCourtier

.all-contributorsrc

@@ -15,7 +15,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
 
       - name: Restore lychee cache
         uses: actions/cache@v4
@@ -24,8 +24,8 @@ jobs:
           key: cache-lychee-${{ github.sha }}
           restore-keys: cache-lychee-
 
-      - name: Set up Lychee
-        uses: lycheeverse/lychee-action@v1.10.0
+      - name: Run lychee
+        uses: lycheeverse/lychee-action@v2
         with:
           args: >-
             --cache

.github/workflows/lychee_links.yaml

@@ -2,8 +2,10 @@ name: Nightly dependencies at develop
 
 on:
   workflow_dispatch:
+
+  # run every weekday at 03:15 UTC
   schedule:
-    - cron: "0 23 * * 1"
+    - cron: "15 3 * * 1-5"
 
 concurrency:
   # github.workflow: name of the workflow, so that we don't cancel other workflows
@@ -20,7 +22,7 @@ jobs:
       matrix:
         os: [ubuntu-latest, macos-14]
         python-version: ["3.12"]
-        suite: ["unit", "integration", "examples"]
+        suite: ["unit", "integration", "examples", "notebooks"]
 
     name: Test-${{ matrix.os }}-py-${{ matrix.python-version }}-${{ matrix.suite }})
 
@@ -44,5 +46,7 @@ jobs:
           elif [[ "${{ matrix.suite }}" == "integration" ]]; then
               python -m pytest --integration
           elif [[ "${{ matrix.suite }}" == "examples" ]]; then
-              python -m pytest --nbmake --examples
+              python -m pytest --examples
+          elif [[ "${{ matrix.suite }}" == "notebooks" ]]; then
+              python -m pytest --notebooks --nbmake --nbmake-timeout=1000 examples/
           fi

.github/workflows/nightly_dependency_tests.yaml

@@ -6,9 +6,9 @@ on:
     branches:
       - main
 
-  # runs every day at 03:00 UTC
+  # run every Monday at 03:45 UTC
   schedule:
-    - cron: '0 3 * * *'
+    - cron: '45 3 * * 1'
 
 # Check noxfile.py for associated environment variables
 env:
@@ -98,9 +98,12 @@ jobs:
       - name: Integration tests with nox
         run: python -m nox -s integration
 
-      - name: Run examples with nox
+      - name: Run example scripts with nox
         run: python -m nox -s examples
 
+      - name: Run example notebooks with nox
+        run: python -m nox -s notebooks
+
   # M-series Mac Mini
   build-apple-mseries:
     # This job filters the matrix JSON created in build_matrix.sh to provide
@@ -139,6 +142,7 @@ jobs:
           python -m nox -s unit
           python -m nox -s integration
           python -m nox -s examples
+          python -m nox -s notebooks
 
       - name: Uninstall pyenv-virtualenv & python
         if: always()

.github/workflows/scheduled_tests.yaml

@@ -62,7 +62,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: [ubuntu-latest, windows-latest, macos-13, macos-14]
+        os: [ubuntu-latest, windows-latest, macos-15-intel, macos-14]
         python-version: ["3.10", "3.11", "3.12"]
         exclude: # We run the coverage tests on macos-14 with Python 3.12
           - os: macos-14
@@ -84,7 +84,7 @@ jobs:
         run: |
           nox -s unit
 
-  example_tests:
+  example_scripts:
     needs: style
     runs-on: ${{ matrix.os }}
     strategy:
@@ -109,20 +109,23 @@ jobs:
         run: |
           nox -s examples
 
-  # Notebooks on macos-14
   example_notebooks:
     needs: style
-    runs-on: macos-14
+    runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
-    name: Test notebooks (macos-14 / Python 3.12)
+      matrix:
+        os: [macos-14]
+        python-version: ["3.12"]
+
+    name: Test notebooks (${{ matrix.os }} / Python ${{ matrix.python-version }})
 
     steps:
       - uses: actions/checkout@v4
-      - name: Set up Python 3.12
+      - name: Set up Python ${{ matrix.python-version }}
         uses: actions/setup-python@v4
         with:
-          python-version: 3.12
+          python-version: ${{ matrix.python-version }}
       - name: Install dependencies
         run: |
           python -m pip install --upgrade pip nox[uv] openpyxl ipywidgets

.github/workflows/test_on_pull_request.yaml

@@ -5,7 +5,7 @@ ci:
 
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.13.3"
+    rev: "v0.14.3"
     hooks:
       - id: ruff
         args: [--fix, --show-fixes]