Build with conda python

Author: rhpvorderman

.github/workflows/ci.yml

@@ -9,6 +9,12 @@ on:
     tags:
       - "*"
 
+defaults:
+  run:
+    # This is needed for miniconda, see:
+    # https://github.com/marketplace/actions/setup-miniconda#important.
+    shell: bash -l {0}
+
 jobs:
   lint:
     runs-on: ubuntu-20.04
@@ -71,21 +77,24 @@ jobs:
       - uses: actions/[email protected]
         with:
           submodules: recursive
-      - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v2.2.1
+      - name: Install miniconda.
+        uses: conda-incubator/setup-miniconda@v2.0.1 # https://github.com/conda-incubator/setup-miniconda.
         with:
-          python-version: ${{ matrix.python-version }}
-      - name: Install tox and upgrade setuptools
-        run: pip install --upgrade tox setuptools
-      - name: Install build dependencies (Linux)  # Yasm in pypa/manylinux images.
-        run: sudo apt install yasm
-        if: runner.os == 'Linux'
-      - name: Install build dependencies (Macos)
-        run: brew install nasm automake autoconf
-        if: runner.os == 'macOS'
-      - name: install build dependencies (Windows)
-        run: conda install nasm vs2019_win-64
+          channels: conda-forge,bioconda,defaults
+      - name: Install requirements (universal)
+        run: conda install python=${{ matrix.python-version }} tox
+      - name: Install requirements (unix)
+        run: conda install make automake autoconf libtool
+        if: runner.os != 'Windows'
+      - name: install requirements (Windows)
         if: runner.os == 'Windows'
+        run: conda install vs2019_win-64
+      - name: install assembler (nasm)
+        run: conda install nasm
+        if: runner.os != 'Linux'
+      - name: install assembler (yasm)  # Yasm in pypa/manylinux images.
+        run: conda install yasm
+        if: runner.os == 'Linux'
       - name: Run tests
         run: tox -e py3
       - name: Upload coverage report
@@ -96,11 +105,6 @@ jobs:
   test-dynamic:
     runs-on: ${{ matrix.os }}
     needs: lint
-    defaults:
-      run:
-        # This is needed for miniconda, see:
-        # https://github.com/marketplace/actions/setup-miniconda#important.
-        shell: bash -l {0}
     strategy:
       matrix:
         os: ["ubuntu-latest", "macos-latest", "windows-latest"]