@@ -45,23 +45,49 @@ and ``gzip`` modules from the stdlib (with some minor exceptions, see below).
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Installation
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------------
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+ Recommended installation via conda
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+ ..................................
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+ The recommended installation is an installation via Conda. For example using
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+ the `miniconda <https://docs.conda.io/en/latest/miniconda.html >`_ installer
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+ with a properly setup `conda-forge
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+ <https://conda-forge.org/docs/user/introduction.html#how-can-i-install-packages-from-conda-forge> `_
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+ channel. When used with bioinformatics tools setting up `bioconda
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+ <http://bioconda.github.io/user/install.html#install-conda> `_
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+ provides a clear set of installation instructions for conda.
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+
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+ python-isal is available on conda-forge and can be installed with
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- isa-l version 2.26.0 or higher is needed. This includes bindings for the
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- adler32 function.
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+ .. code-block ::
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+
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+ conda install python-isal
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+
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+ This will automatically install the isa-l library dependency as well, since
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+ it is available on conda-forge.
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+
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+ Installation with pip
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+ .....................
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+ isa-l version 2.26.0 or higher is needed on your system. This includes bindings
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+ for the adler32 function.
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isa-l is available in numerous Linux distro's as well as on conda via the
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conda-forge channel. Checkout the `ports documentation
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<https://github.com/intel/isa-l/wiki/Ports--Repos> `_ on the isa-l project wiki
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- to find out how to install it.
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+ to find out how to install it. It is important that the development headers
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+ are also installed.
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+
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+ On debian and ubuntu the isa-l libraries (including the development headers)
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+ can be installed with:
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+
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+ .. code-block ::
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+
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+ sudo apt install libisal-dev
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python-isal can be installed via pypi with:
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.. code-block ::
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pip install isal
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- This requires the isa-l library to be installed on your pc.
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-
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The latest development version of python-isal can be installed with
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.. code-block ::
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