update documentation

Author: gduscher

notebooks/2_Image_Tools.ipynb

@@ -55,7 +55,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.8.11"
+   "version": "3.13.5"
   },
   "toc": {
    "base_numbering": "3",

notebooks/3_Spectroscopy_Tools.ipynb

@@ -2,7 +2,9 @@
  "cells": [
   {
    "cell_type": "markdown",
-   "metadata": {},
+   "metadata": {
+    "jp-MarkdownHeadingCollapsed": true
+   },
    "source": [
     "<font size = \"5\"> **[pyTEMlib](0_pyTEMlib.ipynb)** </font>\n",
     "\n",
@@ -27,15 +29,22 @@
     "The University of Tennessee, Knoxville\n",
     "\n",
     "\n",
-    "Usage of the Image Tools of [pyTEMlib](_pyTEMlib.ipynb)\n",
+    "Usage of the \n",
+    "- **eels_tools**\n",
+    "- **eds_tools**\n",
+    "\n",
+    "of [pyTEMlib](_pyTEMlib.ipynb)\n",
+    "\n",
+    "<font size = \"4\"> **eels_tools** </font>\n",
     "\n",
-    "## [Low-Loss Spectra](Spectroscopy/Analyse_Low_Loss.ipynb)\n",
-    "## [Core-Loss Spectra](Spectroscopy/Analysis_Core_Loss.ipynb)\n",
+    "## [Low-Loss Spectra](Spectroscopy/Analyse_EELS.ipynb)\n",
+    "## [Core-Loss Spectra](Spectroscopy/Analyse_EELS.ipynb)\n",
     "## [Low-Loss Spectral Images](Spectroscopy/Analyse_Low-Loss_Spectral_Images.ipynb)\n",
     "## [Core-Loss Spectral Images](Spectroscopy/Analyse_Core-Loss_Spectral_Images.ipynb)\n",
     "\n",
-    "## [EDS Spectra](Spectroscopy/Analyse_EDS_Spectra.ipynb)\n",
-    "## [EDS Spectral Images](Spectroscopy/Analyse_EDS_Spectral_Images.ipynb)\n"
+    "<font size = \"4\"> **eds_tools** </font>\n",
+    "## [EDS Spectra](Spectroscopy/EDS.ipynb)\n",
+    "## [EDS Spectral Images](Spectroscopy/EDS-SI.ipynb)\n"
    ]
   },
   {
@@ -60,7 +69,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.11.7"
+   "version": "3.13.5"
   },
   "toc": {
    "base_numbering": "3",

notebooks/Imaging/I1_Adaptive_Fourier_Filter.ipynb

@@ -12,10 +12,10 @@
     "# Analysis of EDS Spectrum Images\n",
     "<br>\n",
     "\n",
-    "[<img src=https://www.coeuscreativegroup.com/wp-content/uploads/2020/04/download-button.png, width=125>](https://raw.githubusercontent.com/pycroscopy/pyTEMlib/main/notebooks/Spectroscopy/EDS.ipynb) \n",
+    "[<img src=https://www.coeuscreativegroup.com/wp-content/uploads/2020/04/download-button.png, width=125>](https://raw.githubusercontent.com/pycroscopy/pyTEMlib/main/notebooks/Spectroscopy/EDS-SI.ipynb) \n",
     "\n",
     "[![OpenInColab](https://colab.research.google.com/assets/colab-badge.svg)](\n",
-    "    https://colab.research.google.com/github/pycroscopy/pyTEMlib/blob/main/notebooks/Spectroscopy/EDS.ipynb)\n",
+    "    https://colab.research.google.com/github/pycroscopy/pyTEMlib/blob/main/notebooks/Spectroscopy/EDS-SI.ipynb)\n",
     "    \n",
     "part of \n",
     "\n",

notebooks/Spectroscopy/EDS-SI.ipynb

@@ -5,7 +5,7 @@
    "id": "90e0cd4a-149a-43e5-808f-b32b27d7ca5a",
    "metadata": {},
    "source": [
-    "<font size = \"5\"> **EELS_Tools:  [Spectroscopy](../4_EELS_Tools.ipynb)** </font>\n",
+    "<font size = \"5\"> **EDS_Tools:  [Spectroscopy](../4_EELS_Tools.ipynb)** </font>\n",
     "\n",
     "<hr style=\"height:1px;border-top:4px solid #FF8200\" />\n",
     "\n",