LINT - Run updated pre-commit hooks (#2049)

Follows-up #2044

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Daniel McCloy <[email protected]>
Co-authored-by: M Bussonnier <[email protected]>

Author: 4 people

.git-blame-ignore-revs

@@ -5,9 +5,11 @@
 # https://git-scm.com/docs/git-config#Documentation/git-config.txt-blameignoreRevsFile
 # https://github.com/pydata/pydata-sphinx-theme/pull/713
 #
-90550b66ace16a370caa446e54698b126fda740b  # initial black-format
-236d4c6d1f10f5da064d929e9eb594daecf23551  # apply black 20.8b1 format
-69f1a42a3b184f4ba4c98f1745779a277d56c5e2  # [pre-commit.ci] Automatic linting and formatting fixes
-a35529c9ee8d5863613df40787cda0021b3e0128  # Manual fixes for stylelint
-ce583b8f3136d52e8056c9a651bf6f92e7922f79  # Manual adjustments to autofixes
-d1ee9eb7a132cde51433e9594513319fdab41f2f  # Autofix (stylelint)
+90550b66ace16a370caa446e54698b126fda740b # initial black-format
+236d4c6d1f10f5da064d929e9eb594daecf23551 # apply black 20.8b1 format
+69f1a42a3b184f4ba4c98f1745779a277d56c5e2 # [pre-commit.ci] Automatic linting and formatting fixes
+a35529c9ee8d5863613df40787cda0021b3e0128 # Manual fixes for stylelint
+ce583b8f3136d52e8056c9a651bf6f92e7922f79 # Manual adjustments to autofixes
+d1ee9eb7a132cde51433e9594513319fdab41f2f # Autofix (stylelint)
+0f3aa5ca174fe1534ef4817d42f0e2ffa7d9d921 # [pre-commit.ci] Automatic linting and formatting fixes
+9c5a3d592d03849bd050fe946b246145ad171605 # Automated and manual fixes for pre-commits

.pre-commit-config.yaml

@@ -9,41 +9,38 @@ ci:
 # Fix the node version to avoid a GLIBC error
 # ref: https://stackoverflow.com/questions/71939099/bitbucket-pipeline-error-installing-pre-commit-ts-lint/71940852#71940852
 default_language_version:
-  node: 16.14.2
+  node: 22.9.0
 
 repos:
-  - repo: https://github.com/pre-commit/mirrors-prettier
-    rev: v4.0.0-alpha.8
+  - repo: "https://github.com/pycontribs/mirrors-prettier"
+    rev: v3.3.3
     hooks:
       - id: prettier
         # Exclude the HTML, since it doesn't understand Jinja2
         # exclude also the webpack.config.js file has it embed complete url dificult to prettify
         # exclude the pytest-regressions folder tests/test_ally
         exclude: .+\.html|webpack\.config\.js|tests/test_a11y/
 
-  - repo: https://github.com/psf/black
-    rev: 24.10.0
-    hooks:
-      - id: black
-
-  - repo: https://github.com/astral-sh/ruff-pre-commit
+  - repo: "https://github.com/astral-sh/ruff-pre-commit"
     rev: "v0.7.2"
     hooks:
       - id: ruff
+        args: [--exit-non-zero-on-fix]
+      - id: ruff-format
 
-  - repo: https://github.com/asottile/pyupgrade
+  - repo: "https://github.com/asottile/pyupgrade"
     rev: v3.19.0
     hooks:
       - id: pyupgrade
         args: [--py37-plus]
 
-  - repo: https://github.com/Riverside-Healthcare/djLint
+  - repo: "https://github.com/Riverside-Healthcare/djLint"
     rev: v1.35.4
     hooks:
       - id: djlint-jinja
         types_or: ["html"]
 
-  - repo: https://github.com/PyCQA/doc8
+  - repo: "https://github.com/PyCQA/doc8"
     rev: v1.1.2
     hooks:
       - id: doc8
@@ -53,12 +50,12 @@ repos:
     hooks:
       - id: nbstripout
 
-  - repo: https://github.com/mondeja/pre-commit-po-hooks
+  - repo: "https://github.com/mondeja/pre-commit-po-hooks"
     rev: v1.7.3
     hooks:
       - id: remove-metadata
 
-  - repo: https://github.com/thibaudcolas/pre-commit-stylelint
+  - repo: "https://github.com/thibaudcolas/pre-commit-stylelint"
     rev: v16.10.0
     hooks:
       - id: stylelint
@@ -68,3 +65,9 @@ repos:
           # stylelint itself needs to be here when using additional_dependencies.
           - [email protected]
           - [email protected]
+
+  - repo: "https://github.com/pre-commit/pre-commit-hooks"
+    rev: v5.0.0
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer

docs/_extension/component_directive.py

@@ -6,6 +6,7 @@
 """
 
 import re
+
 from pathlib import Path
 from typing import Any, Dict, List
 
@@ -14,6 +15,7 @@
 from sphinx.util import logging
 from sphinx.util.docutils import SphinxDirective
 
+
 logger = logging.getLogger(__name__)
 
 

docs/_extension/gallery_directive.py

@@ -19,6 +19,7 @@
 from sphinx.util.docutils import SphinxDirective
 from yaml import safe_load
 
+
 logger = logging.getLogger(__name__)
 
 
@@ -76,7 +77,7 @@ def run(self) -> List[nodes.Node]:
             path_doc = Path(path_doc).parent
             path_data = (path_doc / path_data_rel).resolve()
             if not path_data.exists():
-                logger.info(f"Could not find grid data at {path_data}.")
+                logger.info("Could not find grid data at %s.", path_data)
                 nodes.text("No grid data found at {path_data}.")
                 return
             yaml_string = path_data.read_text()

docs/conf.py

@@ -8,6 +8,7 @@
 # -- Path setup --------------------------------------------------------------
 import os
 import sys
+
 from pathlib import Path
 from typing import Any, Dict
 
@@ -16,6 +17,7 @@
 
 import pydata_sphinx_theme
 
+
 sys.path.append(str(Path(".").resolve()))
 
 # -- Project information -----------------------------------------------------
@@ -192,7 +194,8 @@
     },
     "use_edit_page_button": True,
     "show_toc_level": 1,
-    "navbar_align": "left",  # [left, content, right] For testing that the navbar items align properly
+    # [left, content, right] For testing that the navbar items align properly
+    "navbar_align": "left",
     # "show_nav_level": 2,
     "announcement": "https://raw.githubusercontent.com/pydata/pydata-sphinx-theme/main/docs/_templates/custom-template.html",
     "show_version_warning_banner": True,
@@ -294,10 +297,15 @@
 def setup_to_main(
     app: Sphinx, pagename: str, templatename: str, context, doctree
 ) -> None:
-    """Add a function that jinja can access for returning an "edit this page" link pointing to `main`."""
+    """
+    Add a function that jinja can access for returning an "edit this page" link
+    pointing to `main`.
+    """
 
     def to_main(link: str) -> str:
-        """Transform "edit on github" links and make sure they always point to the main branch.
+        """
+        Transform "edit on github" links and make sure they always point to the
+        main branch.
 
         Args:
             link: the link to the github edit interface

docs/examples/pydata.ipynb

@@ -29,6 +29,7 @@
     "import numpy as np\n",
     "import pandas as pd\n",
     "\n",
+    "\n",
     "rng = np.random.default_rng(seed=15485863)\n",
     "data = rng.standard_normal((100, 26))\n",
     "df = pd.DataFrame(data, columns=list(string.ascii_lowercase))\n",
@@ -51,8 +52,10 @@
     "import ipywidgets as widgets\n",
     "import numpy as np\n",
     "import pandas as pd\n",
+    "\n",
     "from IPython.display import display\n",
     "\n",
+    "\n",
     "tab = widgets.Tab()\n",
     "\n",
     "descr_str = \"Hello\"\n",
@@ -65,9 +68,9 @@
     "\n",
     "# render in output widgets\n",
     "with widget_images:\n",
-    "    display(pd.DataFrame(np.random.randn(10,10)))\n",
+    "    display(pd.DataFrame(np.random.randn(10, 10)))\n",
     "with widget_annotations:\n",
-    "    display(pd.DataFrame(np.random.randn(10,10)))\n",
+    "    display(pd.DataFrame(np.random.randn(10, 10)))\n",
     "\n",
     "tab.children = [widget_images, widget_annotations]\n",
     "tab.titles = [\"Images\", \"Annotations\"]\n",
@@ -90,6 +93,7 @@
    "source": [
     "import matplotlib.pyplot as plt\n",
     "\n",
+    "\n",
     "fig, ax = plt.subplots()\n",
     "ax.scatter(df[\"a\"], df[\"b\"], c=df[\"b\"], s=3)"
    ]
@@ -125,10 +129,13 @@
     "import plotly.express as px\n",
     "import plotly.io as pio\n",
     "\n",
+    "\n",
     "pio.renderers.default = \"notebook\"\n",
     "\n",
     "df = px.data.iris()\n",
-    "fig = px.scatter(df, x=\"sepal_width\", y=\"sepal_length\", color=\"species\", size=\"sepal_length\")\n",
+    "fig = px.scatter(\n",
+    "    df, x=\"sepal_width\", y=\"sepal_length\", color=\"species\", size=\"sepal_length\"\n",
+    ")\n",
     "fig"
    ]
   },
@@ -149,11 +156,10 @@
    "source": [
     "import xarray as xr\n",
     "\n",
+    "\n",
     "data = xr.DataArray(\n",
-    "        np.random.randn(2, 3),\n",
-    "        dims=(\"x\", \"y\"),\n",
-    "        coords={\"x\": [10, 20]}, attrs={\"foo\": \"bar\"}\n",
-    "      )\n",
+    "    np.random.randn(2, 3), dims=(\"x\", \"y\"), coords={\"x\": [10, 20]}, attrs={\"foo\": \"bar\"}\n",
+    ")\n",
     "data"
    ]
   },
@@ -174,8 +180,9 @@
    "source": [
     "from ipyleaflet import Map, basemaps\n",
     "\n",
+    "\n",
     "# display a map centered on France\n",
-    "m = Map(basemap=basemaps.Esri.WorldImagery,  zoom=5, center=[46.21, 2.21])\n",
+    "m = Map(basemap=basemaps.Esri.WorldImagery, zoom=5, center=[46.21, 2.21])\n",
     "m"
    ]
   }

docs/scripts/generate_collaborators_gallery.py

@@ -1,12 +1,17 @@
-"""Uses the GitHub API to list a gallery of all people with direct access to the repository."""
+"""
+Uses the GitHub API to list a gallery of all people with direct access to the
+repository.
+"""
 
 import json
 import shlex
+
 from pathlib import Path
 from subprocess import run
 
 from yaml import dump
 
+
 COLLABORATORS_API = "https://api.github.com/repos/pydata/pydata-sphinx-theme/collaborators?affiliation=direct"
 
 print("Grabbing latest collaborators with GitHub API via GitHub's CLI...")

docs/scripts/update_kitchen_sink.py

@@ -3,10 +3,13 @@
 from pathlib import Path
 from urllib.request import urlopen
 
+
 EXTRA_MESSAGE = """\
 .. note::
 
-   The Kitchen Sink was generated from the `Sphinx Themes website <https://sphinx-themes.org/>`_, a community-supported showcase of themes for `Sphinx <https://www.sphinx-doc.org/>`_.
+   The Kitchen Sink was generated from the
+   `Sphinx Themes website <https://sphinx-themes.org/>`_, a community-supported showcase
+   of themes for `Sphinx <https://www.sphinx-doc.org/>`_.
    Check it out to see other great themes.
 
    .. button-link:: https://sphinx-themes.org

docs/user_guide/layout.rst

@@ -593,4 +593,3 @@ Please find here the full list of keys you can use in the ``html_theme_options``
 .. include:: ../../src/pydata_sphinx_theme/theme/pydata_sphinx_theme/theme.conf
     :code: ini
     :class: highlight-ini
-

pyproject.toml

@@ -100,22 +100,30 @@ ignore = ["D001"] # we follow a 1 line = 1 paragraph style
 
 [tool.ruff]
 fix = true
+# keep consistent with black
+line-length = 88
+indent-width = 4
 
 [tool.ruff.lint]
 ignore = [
-  "E501", # line too long | Black take care of it
   "D107", # Missing docstring in `__init__` | set the docstring in the class
+  "D205", # 1 blank line required between summary line and description,
+  "D212",  # docstring summary must be on first physical line
+  "W291", # let pre-commit handle trailing whitespace
 
 ]
-ignore-init-module-imports = true
-select = ["E", "F", "W", "I", "D", "RUF"]
+select = ["E", "F", "W", "I", "D", "RUF", "G"]
 
 [tool.ruff.lint.flake8-quotes]
 docstring-quotes = "double"
 
 [tool.ruff.lint.pydocstyle]
 convention = "google"
 
+[tool.ruff.lint.isort]
+lines-between-types = 1
+lines-after-imports = 2
+
 [tool.djlint]
 profile = "jinja"
 extension = "html"