unable to extract MoleculeNet dataset

[LanceKnight]

Hello,

I downloaded SIDER dataset from MoleculeNet but it requires manual gunzip. The automatic extra of the .gz file does not work. This makes me unable to use ClearML, which overwrites my manually extracted file everytime.

[LanceKnight]

Also, I cannot find the extract_gz in torch_geometric.data documentation. Can someone help?

[rusty1s]

Mh, works for me via:

from torch_geometric.datasets import MoleculeNet
MoleculeNet('/tmp/MoleculeNet', 'Sider')

You can find the code of extract_gz here. This is just an internal function, so we do not provide a documentation for it.

[LanceKnight]

Hi, @rusty1s ,

I tested with relative and absolute paths. It looks like the extraction does NOT work for the relative path but works for the absolute path.

[rusty1s]

You are right. I fixed it in master :) Thanks a lot for catching this.

[LanceKnight]

@rusty1s Thank you :)