Install Pyg to mac M1 #4969

sultanbeishenkulov · 2022-07-12T16:06:20Z

sultanbeishenkulov
Jul 12, 2022

hi everyone, I saw few discussions here on how to install PyG on mac M1 and I noticed that some of the users did it with M1 machine, I tried to follow the steps of @pythonpanda2 which were: rusty1s/pytorch_scatter#241 (comment)

Still I could manage installing it. If somebody had the same issue and resolved it, could you please describe in a detail (like a guide) how to do it, like how did you install Cuda on your M1, etc.
If there are more M1 confused users, please let me know, maybe we can work it out together.
I would highly appreciate.
Thank you and best regards.

pythonpanda2 · 2022-07-12T16:11:58Z

pythonpanda2
Jul 12, 2022

@sultanbeish I think clearly there is some misunderstanding here . The M1 family of MacBook's are ARM based. Cuda is for NVIDIA GPU machines ?. I think you might have to review the hardware / software ecosystem.

1 reply

sultanbeishenkulov Jul 12, 2022
Author

@sultanbeish I think clearly there is some misunderstanding here . The M1 family of MacBook's are ARM based. Cuda is for NVIDIA GPU machines ?. I think you might have to review the hardware / software ecosystem.

Thank you for you response. Indeed that is what I thought, but then after reading the installation guide I assumed that Cuda is essential for installing PyG, so you telling me that I do not need Cuda for installing Pyg? I tried to follow the steps you wrote in the comment I mentioned but got the errors, for example after:
conda install -y clang_osx-arm64 clangxx_osx-arm64 gfortran_osx-arm64

I get:

Solving environment: failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

gfortran_osx-arm64
clangxx_osx-arm64
clang_osx-arm64

Current channels:

And also you wrote to check the torch version, mine is 1.10.2 and when I try to install:
conda install pytorch==1.11.0

I get the error:

PackagesNotFoundError: The following packages are not available from current channels:

pytorch==1.11.0

Current channels:

However, is it possible to have PyG working on M1 machine?

My apologies if I ask silly questions, and appreciate your replies and explanation.

pythonpanda2 · 2022-07-12T16:13:00Z

pythonpanda2
Jul 12, 2022

@rusty1s

0 replies

pythonpanda2 · 2022-07-12T17:46:50Z

pythonpanda2
Jul 12, 2022

@sultanbeish No need to apologize. Yeah it is not able to find the packages for the chosen version. Just curious. What version of python are you going with ? Somethings must have changed since the last time I posted the detailed steps. You might have to play around a bit till you find a suitable version for which all the dependencies exist.

1 reply

sultanbeishenkulov Jul 12, 2022
Author

@sultanbeish No need to apologize. Yeah it is not able to find the packages for the chosen version. Just curious. What version of python are you going with ? Somethings must have changed since the last time I posted the detailed steps. You might have to play around a bit till you find a suitable version for which all the dependencies exist.

my python version is 3.8.13. I tried to implement exactly as your steps, with creating the env with python=3.8, looks like everything goes fine but when I download:
MACOSX_DEPLOYMENT_TARGET=12.3 CC=clang CXX=clang++ python -m pip --no-cache-dir install torch-scatter -f https://data.pyg.org/whl/torch-1.11.0+${cpu}.html

i get:

"""
Looking in links: https://data.pyg.org/whl/torch-1.11.0+.html
Collecting torch-scatter
Downloading torch_scatter-2.0.9.tar.gz (21 kB)
Preparing metadata (setup.py) ... done
Building wheels for collected packages: torch-scatter
Building wheel for torch-scatter (setup.py) ... error
error: subprocess-exited-with-error

× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [31 lines of output]
Compiling without OpenMP...
Compiling without OpenMP...
Compiling without OpenMP...
Compiling without OpenMP...
/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/setuptools/dist.py:757: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.8
creating build/lib.macosx-10.9-x86_64-3.8/torch_scatter
copying torch_scatter/placeholder.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter
copying torch_scatter/init.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter
copying torch_scatter/segment_csr.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter
copying torch_scatter/segment_coo.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter
copying torch_scatter/utils.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter
copying torch_scatter/scatter.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter
creating build/lib.macosx-10.9-x86_64-3.8/torch_scatter/composite
copying torch_scatter/composite/std.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter/composite
copying torch_scatter/composite/init.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter/composite
copying torch_scatter/composite/logsumexp.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter/composite
copying torch_scatter/composite/softmax.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter/composite
running build_ext
building 'torch_scatter._scatter_cpu' extension
creating build/temp.macosx-10.9-x86_64-3.8
creating build/temp.macosx-10.9-x86_64-3.8/csrc
creating build/temp.macosx-10.9-x86_64-3.8/csrc/cpu
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include -arch x86_64 -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include -arch x86_64 -Icsrc -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/TH -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/THC -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include/python3.8 -c csrc/cpu/scatter_cpu.cpp -o build/temp.macosx-10.9-x86_64-3.8/csrc/cpu/scatter_cpu.o -O2 -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_clang" -DPYBIND11_STDLIB="_libcpp" -DPYBIND11_BUILD_ABI="_cxxabi1002" -DTORCH_EXTENSION_NAME=_scatter_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
clang: error: invalid version number in 'MACOSX_DEPLOYMENT_TARGET=12.3'
error: command '/usr/bin/clang' failed with exit code 1
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for torch-scatter
Running setup.py clean for torch-scatter
Failed to build torch-scatter
Installing collected packages: torch-scatter
Running setup.py install for torch-scatter ... error
error: subprocess-exited-with-error

× Running setup.py install for torch-scatter did not run successfully.
│ exit code: 1
╰─> [33 lines of output]
Compiling without OpenMP...
Compiling without OpenMP...
Compiling without OpenMP...
Compiling without OpenMP...
/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/setuptools/dist.py:757: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
running install
/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
creating build
creating build/lib.macosx-10.9-x86_64-3.8
creating build/lib.macosx-10.9-x86_64-3.8/torch_scatter
copying torch_scatter/placeholder.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter
copying torch_scatter/init.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter
copying torch_scatter/segment_csr.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter
copying torch_scatter/segment_coo.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter
copying torch_scatter/utils.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter
copying torch_scatter/scatter.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter
creating build/lib.macosx-10.9-x86_64-3.8/torch_scatter/composite
copying torch_scatter/composite/std.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter/composite
copying torch_scatter/composite/init.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter/composite
copying torch_scatter/composite/logsumexp.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter/composite
copying torch_scatter/composite/softmax.py -> build/lib.macosx-10.9-x86_64-3.8/torch_scatter/composite
running build_ext
building 'torch_scatter._scatter_cpu' extension
creating build/temp.macosx-10.9-x86_64-3.8
creating build/temp.macosx-10.9-x86_64-3.8/csrc
creating build/temp.macosx-10.9-x86_64-3.8/csrc/cpu
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include -arch x86_64 -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include -arch x86_64 -Icsrc -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/TH -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/THC -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include/python3.8 -c csrc/cpu/scatter_cpu.cpp -o build/temp.macosx-10.9-x86_64-3.8/csrc/cpu/scatter_cpu.o -O2 -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_clang" -DPYBIND11_STDLIB="_libcpp" -DPYBIND11_BUILD_ABI="_cxxabi1002" -DTORCH_EXTENSION_NAME=_scatter_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
clang: error: invalid version number in 'MACOSX_DEPLOYMENT_TARGET=12.3'
error: command '/usr/bin/clang' failed with exit code 1
[end of output]

note: This error originates from a subprocess, and is likely not a problem with pip.
error: legacy-install-failure

× Encountered error while trying to install package.
╰─> torch-scatter

note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.
(thesis) sultans-MacBook-Air:~ sultanbeishenkulov$ MACOSX_DEPLOYMENT_TARGET=12.3 CC=clang CXX=clang++ python -m pip --no-cache-dir install torch-scatter -f https://data.pyg.org/whl/torch-1.11.0+${cpu}.html
"""

also tried with newer python version(3.10.4) and also did not work

pythonpanda2 · 2022-07-12T19:59:01Z

pythonpanda2
Jul 12, 2022

Cherry picking an error from the stack trace
clang: error: invalid version number in 'MACOSX_DEPLOYMENT_TARGET=12.3'

So you would need to check the version of your macOS.

4 replies

sultanbeishenkulov Jul 13, 2022
Author

I had Big Sur, today I updated to 12.4 (new available one), but still does not work, do you if it is possible now to downgrade to 12.3? looked in the internet, but did not find anything :(

rusty1s Jul 14, 2022
Maintainer

On M1 macOS, you will need to install from source. Try running

pip install --verbose torch-scatter

sultanbeishenkulov Jul 14, 2022
Author

Hello, thank you for a reply, I installed setuptools but still get the error:

Using pip 22.1.2 from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/pip (python 3.8)
Collecting torch-scatter
  Using cached torch_scatter-2.0.9.tar.gz (21 kB)
  Running command python setup.py egg_info
  Compiling without OpenMP...
  Compiling without OpenMP...
  Compiling without OpenMP...
  Compiling without OpenMP...
  running egg_info
  creating /private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-pip-egg-info-yqffxsgr/torch_scatter.egg-info
  writing /private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-pip-egg-info-yqffxsgr/torch_scatter.egg-info/PKG-INFO
  writing dependency_links to /private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-pip-egg-info-yqffxsgr/torch_scatter.egg-info/dependency_links.txt
  writing requirements to /private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-pip-egg-info-yqffxsgr/torch_scatter.egg-info/requires.txt
  writing top-level names to /private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-pip-egg-info-yqffxsgr/torch_scatter.egg-info/top_level.txt
  writing manifest file '/private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-pip-egg-info-yqffxsgr/torch_scatter.egg-info/SOURCES.txt'
  reading manifest file '/private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-pip-egg-info-yqffxsgr/torch_scatter.egg-info/SOURCES.txt'
  reading manifest template 'MANIFEST.in'
  /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/setuptools/dist.py:757: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
    warnings.warn(
  warning: no previously-included files matching '*' found under directory 'test'
  adding license file 'LICENSE'
  writing manifest file '/private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-pip-egg-info-yqffxsgr/torch_scatter.egg-info/SOURCES.txt'
  Preparing metadata (setup.py) ... done
Building wheels for collected packages: torch-scatter
  Running command python setup.py bdist_wheel
  Compiling without OpenMP...
  Compiling without OpenMP...
  Compiling without OpenMP...
  Compiling without OpenMP...
  /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/setuptools/dist.py:757: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
    warnings.warn(
  running bdist_wheel
  running build
  running build_py
  creating build
  creating build/lib.macosx-11.0-arm64-3.8
  creating build/lib.macosx-11.0-arm64-3.8/torch_scatter
  copying torch_scatter/placeholder.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter
  copying torch_scatter/__init__.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter
  copying torch_scatter/segment_csr.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter
  copying torch_scatter/segment_coo.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter
  copying torch_scatter/utils.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter
  copying torch_scatter/scatter.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter
  creating build/lib.macosx-11.0-arm64-3.8/torch_scatter/composite
  copying torch_scatter/composite/std.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter/composite
  copying torch_scatter/composite/__init__.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter/composite
  copying torch_scatter/composite/logsumexp.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter/composite
  copying torch_scatter/composite/softmax.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter/composite
  running build_ext
  building 'torch_scatter._scatter_cpu' extension
  creating build/temp.macosx-11.0-arm64-3.8
  creating build/temp.macosx-11.0-arm64-3.8/csrc
  creating build/temp.macosx-11.0-arm64-3.8/csrc/cpu
  arm64-apple-darwin20.0.0-clang -fno-strict-aliasing -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O3 -Wall -Wstrict-prototypes -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O3 -pipe -fdebug-prefix-map=${SRC_DIR}=/usr/local/src/conda/${PKG_NAME}-${PKG_VERSION} -fdebug-prefix-map=/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis=/usr/local/src/conda-prefix -flto -Wl,-export_dynamic -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include -D_FORTIFY_SOURCE=2 -isystem /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include -Icsrc -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/TH -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/THC -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include/python3.8 -c csrc/cpu/scatter_cpu.cpp -o build/temp.macosx-11.0-arm64-3.8/csrc/cpu/scatter_cpu.o -O2 -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE=\"_clang\" -DPYBIND11_STDLIB=\"_libcpp\" -DPYBIND11_BUILD_ABI=\"_cxxabi1002\" -DTORCH_EXTENSION_NAME=_scatter_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
  clang-12: warning: -Wl,-export_dynamic: 'linker' input unused [-Wunused-command-line-argument]
  In file included from csrc/cpu/scatter_cpu.cpp:1:
  In file included from csrc/cpu/scatter_cpu.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/extension.h:4:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/all.h:8:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/data.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/stateful.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/base.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader_options.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/arg.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/../include/c++/v1/utility:218:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/../include/c++/v1/__debug:14:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/../include/c++/v1/iosfwd:98:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/../include/c++/v1/__mbstate_t.h:29:
  /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/../include/c++/v1/wchar.h:123:15: fatal error: 'wchar.h' file not found
  #include_next <wchar.h>
                ^~~~~~~~~
  1 error generated.
  error: command '/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/arm64-apple-darwin20.0.0-clang' failed with exit code 1
  error: subprocess-exited-with-error
  
  × python setup.py bdist_wheel did not run successfully.
  │ exit code: 1
  ╰─> See above for output.
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  full command: /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/python -u -c '
  exec(compile('"'"''"'"''"'"'
  # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
  #
  # - It imports setuptools before invoking setup.py, to enable projects that directly
  #   import from `distutils.core` to work with newer packaging standards.
  # - It provides a clear error message when setuptools is not installed.
  # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
  #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
  #     manifest_maker: standard file '"'"'-c'"'"' not found".
  # - It generates a shim setup.py, for handling setup.cfg-only projects.
  import os, sys, tokenize
  
  try:
      import setuptools
  except ImportError as error:
      print(
          "ERROR: Can not execute `setup.py` since setuptools is not available in "
          "the build environment.",
          file=sys.stderr,
      )
      sys.exit(1)
  
  __file__ = %r
  sys.argv[0] = __file__
  
  if os.path.exists(__file__):
      filename = __file__
      with tokenize.open(__file__) as f:
          setup_py_code = f.read()
  else:
      filename = "<auto-generated setuptools caller>"
      setup_py_code = "from setuptools import setup; setup()"
  
  exec(compile(setup_py_code, filename, "exec"))
  '"'"''"'"''"'"' % ('"'"'/private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-install-t_weg285/torch-scatter_6d3e3df673b74f679dc1c0b3bf7b6a85/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-wheel-ytgcpwmq
  cwd: /private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-install-t_weg285/torch-scatter_6d3e3df673b74f679dc1c0b3bf7b6a85/
  Building wheel for torch-scatter (setup.py) ... error
  ERROR: Failed building wheel for torch-scatter
  Running setup.py clean for torch-scatter
  Running command python setup.py clean
  Compiling without OpenMP...
  Compiling without OpenMP...
  Compiling without OpenMP...
  Compiling without OpenMP...
  /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/setuptools/dist.py:757: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
    warnings.warn(
  running clean
  removing 'build/temp.macosx-11.0-arm64-3.8' (and everything under it)
  removing 'build/lib.macosx-11.0-arm64-3.8' (and everything under it)
  'build/bdist.macosx-11.0-arm64' does not exist -- can't clean it
  'build/scripts-3.8' does not exist -- can't clean it
  removing 'build'
Failed to build torch-scatter
Installing collected packages: torch-scatter
  Running command Running setup.py install for torch-scatter
  Compiling without OpenMP...
  Compiling without OpenMP...
  Compiling without OpenMP...
  Compiling without OpenMP...
  /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/setuptools/dist.py:757: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
    warnings.warn(
  running install
  /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
    warnings.warn(
  running build
  running build_py
  creating build
  creating build/lib.macosx-11.0-arm64-3.8
  creating build/lib.macosx-11.0-arm64-3.8/torch_scatter
  copying torch_scatter/placeholder.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter
  copying torch_scatter/__init__.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter
  copying torch_scatter/segment_csr.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter
  copying torch_scatter/segment_coo.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter
  copying torch_scatter/utils.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter
  copying torch_scatter/scatter.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter
  creating build/lib.macosx-11.0-arm64-3.8/torch_scatter/composite
  copying torch_scatter/composite/std.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter/composite
  copying torch_scatter/composite/__init__.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter/composite
  copying torch_scatter/composite/logsumexp.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter/composite
  copying torch_scatter/composite/softmax.py -> build/lib.macosx-11.0-arm64-3.8/torch_scatter/composite
  running build_ext
  building 'torch_scatter._scatter_cpu' extension
  creating build/temp.macosx-11.0-arm64-3.8
  creating build/temp.macosx-11.0-arm64-3.8/csrc
  creating build/temp.macosx-11.0-arm64-3.8/csrc/cpu
  arm64-apple-darwin20.0.0-clang -fno-strict-aliasing -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O3 -Wall -Wstrict-prototypes -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O3 -pipe -fdebug-prefix-map=${SRC_DIR}=/usr/local/src/conda/${PKG_NAME}-${PKG_VERSION} -fdebug-prefix-map=/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis=/usr/local/src/conda-prefix -flto -Wl,-export_dynamic -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O3 -ftree-vectorize -fPIC -fPIE -fstack-protector-strong -O2 -pipe -isystem /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include -D_FORTIFY_SOURCE=2 -isystem /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include -Icsrc -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/TH -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/THC -I/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include/python3.8 -c csrc/cpu/scatter_cpu.cpp -o build/temp.macosx-11.0-arm64-3.8/csrc/cpu/scatter_cpu.o -O2 -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE=\"_clang\" -DPYBIND11_STDLIB=\"_libcpp\" -DPYBIND11_BUILD_ABI=\"_cxxabi1002\" -DTORCH_EXTENSION_NAME=_scatter_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
  clang-12: warning: -Wl,-export_dynamic: 'linker' input unused [-Wunused-command-line-argument]
  In file included from csrc/cpu/scatter_cpu.cpp:1:
  In file included from csrc/cpu/scatter_cpu.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/extension.h:4:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/all.h:8:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/data.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/stateful.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/base.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader_options.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/lib/python3.8/site-packages/torch/include/torch/csrc/api/include/torch/arg.h:3:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/../include/c++/v1/utility:218:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/../include/c++/v1/__debug:14:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/../include/c++/v1/iosfwd:98:
  In file included from /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/../include/c++/v1/__mbstate_t.h:29:
  /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/../include/c++/v1/wchar.h:123:15: fatal error: 'wchar.h' file not found
  #include_next <wchar.h>
                ^~~~~~~~~
  1 error generated.
  error: command '/Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/arm64-apple-darwin20.0.0-clang' failed with exit code 1
  error: subprocess-exited-with-error
  
  × Running setup.py install for torch-scatter did not run successfully.
  │ exit code: 1
  ╰─> See above for output.
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  full command: /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/bin/python -u -c '
  exec(compile('"'"''"'"''"'"'
  # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
  #
  # - It imports setuptools before invoking setup.py, to enable projects that directly
  #   import from `distutils.core` to work with newer packaging standards.
  # - It provides a clear error message when setuptools is not installed.
  # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
  #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
  #     manifest_maker: standard file '"'"'-c'"'"' not found".
  # - It generates a shim setup.py, for handling setup.cfg-only projects.
  import os, sys, tokenize
  
  try:
      import setuptools
  except ImportError as error:
      print(
          "ERROR: Can not execute `setup.py` since setuptools is not available in "
          "the build environment.",
          file=sys.stderr,
      )
      sys.exit(1)
  
  __file__ = %r
  sys.argv[0] = __file__
  
  if os.path.exists(__file__):
      filename = __file__
      with tokenize.open(__file__) as f:
          setup_py_code = f.read()
  else:
      filename = "<auto-generated setuptools caller>"
      setup_py_code = "from setuptools import setup; setup()"
  
  exec(compile(setup_py_code, filename, "exec"))
  '"'"''"'"''"'"' % ('"'"'/private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-install-t_weg285/torch-scatter_6d3e3df673b74f679dc1c0b3bf7b6a85/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' install --record /private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-record-1_h2kssb/install-record.txt --single-version-externally-managed --compile --install-headers /Users/sultanbeishenkulov/opt/anaconda3/envs/thesis/include/python3.8/torch-scatter
  cwd: /private/var/folders/z9/z0cpycpj6fn83wyqsf978bg00000gn/T/pip-install-t_weg285/torch-scatter_6d3e3df673b74f679dc1c0b3bf7b6a85/
  Running setup.py install for torch-scatter ... error
error: legacy-install-failure

× Encountered error while trying to install package.
╰─> torch-scatter

note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.
(thesis) sultans-MacBook-Air:~ sultanbeishenkulov$

rusty1s Jul 15, 2022
Maintainer

Take a look at https://stackoverflow.com/questions/26185978/macos-wchar-h-file-not-found?answertab=trending#tab-top.

Install Pyg to mac M1 #4969

Uh oh!

Uh oh!

sultanbeishenkulov Jul 12, 2022

Replies: 4 comments · 6 replies

Uh oh!

pythonpanda2 Jul 12, 2022

Uh oh!

Uh oh!

sultanbeishenkulov Jul 12, 2022 Author

Uh oh!

pythonpanda2 Jul 12, 2022

Uh oh!

Uh oh!

pythonpanda2 Jul 12, 2022

Uh oh!

sultanbeishenkulov Jul 12, 2022 Author

Uh oh!

Uh oh!

pythonpanda2 Jul 12, 2022

Uh oh!

sultanbeishenkulov Jul 13, 2022 Author

Uh oh!

rusty1s Jul 14, 2022 Maintainer

Uh oh!

Uh oh!

sultanbeishenkulov Jul 14, 2022 Author

Uh oh!

rusty1s Jul 15, 2022 Maintainer

sultanbeishenkulov
Jul 12, 2022

Replies: 4 comments 6 replies

pythonpanda2
Jul 12, 2022

sultanbeishenkulov Jul 12, 2022
Author

pythonpanda2
Jul 12, 2022

pythonpanda2
Jul 12, 2022

sultanbeishenkulov Jul 12, 2022
Author

pythonpanda2
Jul 12, 2022

sultanbeishenkulov Jul 13, 2022
Author

rusty1s Jul 14, 2022
Maintainer

sultanbeishenkulov Jul 14, 2022
Author

rusty1s Jul 15, 2022
Maintainer