A few test fixes

Author: Christopher Fonnesbeck

.travis.yml

@@ -3,7 +3,7 @@ python:
   - "2.7"
 before_install:
   - sudo apt-get install liblapack-dev gfortran python-scipy libblas-dev libsuitesparse-dev swig
-install: 
+install:
   - pip install git+https://github.com/numpy/numpy.git
   - pip install scipy
   - pip install matplotlib
@@ -13,5 +13,5 @@ install:
   - pip install Cython
   - pip install scikits.sparse
   - python setup.py build_ext --inplace
-script: 
-  - nosetests -s tests/
+script:
+  - nosetests -s pymc/tests/

pymc/tests/test_step.py

@@ -23,14 +23,14 @@ def test_step_continuous():
 
     for st in steps:
         np.random.seed(1)
-        h = sample(8000, st, start, model = model)
+        h = sample(8000, st, start, track_progress=False, model = model)
         for (var, stat, val, bound) in check:
             np.random.seed(1)
-            h = sample(8000, st, start, model = model)
+            h = sample(8000, st, start, track_progess=False, model = model)
+
+            yield check_stat,repr(st), h, var, stat, val, bound
 
-            yield check_stat,repr(st), h, var, stat, val, bound  
 
 
 
-        
 

pymc/tests/test_trace.py

@@ -13,7 +13,7 @@
 def check_trace(model, trace, n, step, start):
     #try using a trace object a few times
     for i in range(2):
-        trace = sample(n, step, start, trace, model = model)
+        trace = sample(n, step, start, trace, track_progress=False, model = model)
 
         for (var, val) in start.iteritems():
 
@@ -23,11 +23,11 @@ def check_trace(model, trace, n, step, start):
 def test_trace():
     model, start, step,_  = simple_init()
 
-    for     h in [pm.NpTrace]:
+    for h in [pm.NpTrace]:
         for n in [20, 1000]:
             for vars in [model.vars, model.vars + [model.vars[0]**2]]:
                 trace = h(vars)
-                
+
 
                 yield check_trace, model, trace, n, step, start
 
@@ -45,8 +45,8 @@ def test_multitrace():
 def check_multi_trace(model, trace, n, step, start):
 
     for i in range(2):
-        trace = psample(n, step, start, trace, model = model)
-        
+        trace = psample(n, step, start, trace, track_progress=False, model = model)
+
 
         for (var, val) in start.iteritems():
             print [len(tr.samples[var].vals) for tr in trace.traces]
@@ -68,7 +68,7 @@ def test_get_point():
     x = pm.NpTrace(model.vars)
     x.record(p)
     x.record(p2)
-    assert x.point(1) == x[1] 
+    assert x.point(1) == x[1]