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Use LIBS iso. LDFLAGS for sqlite3 func checks
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configure

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configure.ac

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@@ -4220,7 +4220,6 @@ WITH_SAVE_ENV([
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dnl bpo-45774/GH-29507: The CPP check in AC_CHECK_HEADER can fail on FreeBSD,
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dnl hence CPPFLAGS instead of CFLAGS.
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CPPFLAGS="$CPPFLAGS $LIBSQLITE3_CFLAGS"
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LDFLAGS="$LIBSQLITE3_LIBS $LDFLAGS"
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LIBS="$LIBSQLITE3_LIBS $LIBS"
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AC_CHECK_HEADER([sqlite3.h], [

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