-
-
Notifications
You must be signed in to change notification settings - Fork 33.1k
Open
Labels
topic-installationtype-bugAn unexpected behavior, bug, or errorAn unexpected behavior, bug, or error
Description
Bug report
Bug description:
In a conda environment, many library files are not in default path, and conda use rpath
with $ORIGIN
to instruct ld.so
to find .so
files.
However, when a python module come with .so
files, python cannot use $ORIGIN
of a .so
file to load its dependence.
python3 -c 'import pandas;'
failed as "ImportError: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /share/home/uuu/micromamba/envs/n311/lib/python3.11/site-packages/pandas/_libs/window/aggregations.cpython-311-x86_64-linux-gnu.so)"
LD_LIBRARY_PATH=/share/home/uuu/micromamba/envs/n311/lib python3 -c 'import pandas;'
works.
(n311) [uuu@c001 test]$ echo $LD_LIBRARY_PATH
(n311) [uuu@c001 test]$ ldd /share/home/uuu/micromamba/envs/n311/lib/python3.11/site-packages/pandas/_libs/window/aggregations.cpython-311-x86_64-linux-gnu.so
linux-vdso.so.1 (0x00007fff65a6d000)
libstdc++.so.6 => /share/home/uuu/micromamba/envs/n311/lib/python3.11/site-packages/pandas/_libs/window/../../../../../libstdc++.so.6 (0x00007f77ec0d8000)
libm.so.6 => /lib64/libm.so.6 (0x00007f77ebd56000)
libgcc_s.so.1 => /share/home/uuu/micromamba/envs/n311/lib/python3.11/site-packages/pandas/_libs/window/../../../../../libgcc_s.so.1 (0x00007f77ec469000)
libc.so.6 => /lib64/libc.so.6 (0x00007f77eb991000)
librt.so.1 => /lib64/librt.so.1 (0x00007f77eb789000)
/lib64/ld-linux-x86-64.so.2 (0x00007f77ec2bb000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00007f77eb569000)
$ readelf -d /share/home/uuu/micromamba/envs/n311/lib/python3.11/site-packages/pandas/_libs/window/aggregations.cpython-311-x86_64-linux-gnu.so
Dynamic section at offset 0x50778 contains 28 entries:
Tag Type Name/Value
0x0000000000000001 (NEEDED) Shared library: [libstdc++.so.6]
0x0000000000000001 (NEEDED) Shared library: [libm.so.6]
0x0000000000000001 (NEEDED) Shared library: [libgcc_s.so.1]
0x0000000000000001 (NEEDED) Shared library: [libc.so.6]
0x000000000000000f (RPATH) Library rpath: [$ORIGIN/../../../../..]
$ readelf -d /share/home/uuu/micromamba/envs/n311/bin/python3
Dynamic section at offset 0x44a230 contains 34 entries:
Tag Type Name/Value
0x0000000000000001 (NEEDED) Shared library: [libpthread.so.0]
0x0000000000000001 (NEEDED) Shared library: [libdl.so.2]
0x0000000000000001 (NEEDED) Shared library: [libutil.so.1]
0x0000000000000001 (NEEDED) Shared library: [libm.so.6]
0x0000000000000001 (NEEDED) Shared library: [libc.so.6]
0x0000000000000001 (NEEDED) Shared library: [librt.so.1]
0x000000000000000f (RPATH) Library rpath: [$ORIGIN/../lib]
CPython versions tested on:
3.11
Operating systems tested on:
Linux
Linked PRs
Metadata
Metadata
Assignees
Labels
topic-installationtype-bugAn unexpected behavior, bug, or errorAn unexpected behavior, bug, or error