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remove cwl-auto from actions
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.github/workflows/main.yml

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@@ -72,35 +72,6 @@ jobs:
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retention-days: 1
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if-no-files-found: error
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run-cwl-auto-conda:
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runs-on: ubuntu-latest
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steps:
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- name: checkout-repository
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uses: actions/checkout@v2
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- name: install-basic-deps
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uses: ./.github/actions/install-basic-deps
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- name: prepare-conda
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uses: conda-incubator/setup-miniconda@v2
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- name: run-workflow
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shell: bash -l {0}
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run: |
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sudo apt-get update && sudo apt-get install --no-install-recommends --yes python3-pip
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python3 -m pip install cwltool[deps]
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cd $GITHUB_WORKSPACE/exemplary_workflow/cwl
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python3 -m cwltool --debug --beta-conda-dependencies wf_run_exemplary_wf.cwl
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- name: upload-paper-artifact
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uses: actions/upload-artifact@v2
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with:
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name: paper
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path: ./exemplary_workflow/cwl/paper.pdf
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retention-days: 1
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if-no-files-found: error
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run-nextflow:
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runs-on: ubuntu-latest
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