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lines changed Original file line number Diff line number Diff line change 7272 retention-days : 1
7373 if-no-files-found : error
7474
75- run-cwl-auto-conda :
76- runs-on : ubuntu-latest
77-
78- steps :
79- - name : checkout-repository
80- uses : actions/checkout@v2
81-
82- - name : install-basic-deps
83- uses : ./.github/actions/install-basic-deps
84-
85- - name : prepare-conda
86- uses : conda-incubator/setup-miniconda@v2
87-
88- - name : run-workflow
89- shell : bash -l {0}
90- run : |
91- sudo apt-get update && sudo apt-get install --no-install-recommends --yes python3-pip
92- python3 -m pip install cwltool[deps]
93- cd $GITHUB_WORKSPACE/exemplary_workflow/cwl
94- python3 -m cwltool --debug --beta-conda-dependencies wf_run_exemplary_wf.cwl
95-
96- - name : upload-paper-artifact
97- uses : actions/upload-artifact@v2
98- with :
99- name : paper
100- path : ./exemplary_workflow/cwl/paper.pdf
101- retention-days : 1
102- if-no-files-found : error
103-
10475 run-nextflow :
10576 runs-on : ubuntu-latest
10677
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