diff --git a/tests/test_cwl.py b/tests/test_cwl.py new file mode 100644 index 0000000..fca5651 --- /dev/null +++ b/tests/test_cwl.py @@ -0,0 +1,51 @@ +import unittest +import pickle +import subprocess +from python_workflow_definition.cwl import write_workflow + +function_str = """ +def get_prod_and_div(x, y): + return {"prod": x * y, "div": x / y} + + +def get_sum(x, y): + return x + y + + +def get_square(x): + return x ** 2 +""" + +workflow_str = """ +{ + "version": "0.1.0", + "nodes": [ + {"id": 0, "type": "function", "value": "workflow.get_prod_and_div"}, + {"id": 1, "type": "function", "value": "workflow.get_sum"}, + {"id": 2, "type": "function", "value": "workflow.get_square"}, + {"id": 3, "type": "input", "value": 1, "name": "x"}, + {"id": 4, "type": "input", "value": 2, "name": "y"}, + {"id": 5, "type": "output", "name": "result"} + ], + "edges": [ + {"target": 0, "targetPort": "x", "source": 3, "sourcePort": null}, + {"target": 0, "targetPort": "y", "source": 4, "sourcePort": null}, + {"target": 1, "targetPort": "x", "source": 0, "sourcePort": "prod"}, + {"target": 1, "targetPort": "y", "source": 0, "sourcePort": "div"}, + {"target": 2, "targetPort": "x", "source": 1, "sourcePort": null}, + {"target": 5, "targetPort": null, "source": 2, "sourcePort": null} + ] +}""" + +class TestCommonWorkflowLanguage(unittest.TestCase): + def test_common_workflow_language(self): + with open("workflow.py", "w") as f: + f.write(function_str) + + with open("workflow.json", "w") as f: + f.write(workflow_str) + + write_workflow(file_name="workflow.json") + subprocess.check_output(["cwltool", "workflow.cwl", "workflow.yml"]) + with open("result.pickle", "rb") as f: + self.assertEqual(pickle.load(f), 6.25)