CHANGELOG.md

nf-core/variantmtb: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

1.0.0 - Piz Bernina

Added

• filter civic evidences according to patient cancer type
• filter civic evidences through custom filters
• profile actionability containing common civic evidence filters for actionability queries

Fixed

• #10 CGI used to fail when querying files in parallel. Disabled parallelization for CGI.
• important querynator fixes, see querynator:0.5.5 release notes

Dependencies

• updated querynator to 0.6.0

Deprecated

Removed

• --cgi_cancer_type is no longer supported. specify cancer type in sample sheet instead using fields cgi_cancer and civic_cancer

0.2.0 - Wendelstein

Added

• nextflow secrets for CGI credentials.

Fixed

Dependencies

• bcftools version 1.18.

Deprecated

0.1.0 - Paris-Roubaix

Added

• #1 - Query to CGI & CIViC. Creation of a comprehensive HTML report.

Fixed

Dependencies

Deprecated

v1.0dev - [date]

Initial release of nf-core/variantmtb, created with the nf-core template.

Added

Fixed

Dependencies

Deprecated