Only query for ontology classes (#1315)

Without a type definition all types of `class,property,individual,ontology` are returned. As `property` does not provide a parseable curie/obo_id, our integration fails for every query where a property or ontology is returned. By specifying the type to be a `class`, we get only expected results.

Documentation on the API:
https://api.terminology.tib.eu/swagger-ui/index.html?urls.primaryName=version1

Co-authored-by: KochTobi <kochtobi@users.noreply.github.com>

Author: KochTobi

project-management-infrastructure/src/main/java/life/qbic/projectmanagement/infrastructure/ontology/TIBTerminologyServiceIntegration.java

@@ -17,13 +17,10 @@
 import java.net.http.HttpResponse.BodyHandlers;
 import java.nio.charset.StandardCharsets;
 import java.time.Duration;
-import java.time.Instant;
 import java.util.ArrayList;
-import java.util.Comparator;
 import java.util.List;
 import java.util.Objects;
 import java.util.Optional;
-import java.util.stream.Collectors;
 import life.qbic.logging.api.Logger;
 import life.qbic.projectmanagement.application.ontology.LookupException;
 import life.qbic.projectmanagement.application.ontology.OntologyClass;
@@ -243,7 +240,8 @@ private List<TibTerm> fullSearch(String searchTerm, int offset, int limit)
                 searchTerm,
                 StandardCharsets.UTF_8)
                 + "&rows=" + limit + "&start=" + offset
-                + "&ontology=" + createOntologyFilterQueryParameter()))
+                + "&ontology=" + createOntologyFilterQueryParameter()
+                + "&type=class"))
         .header("Content-Type", "application/json").GET().build();
     var response = HTTP_CLIENT.send(termSelectQuery, BodyHandlers.ofString());
     return parseResponse(response).stream().toList();
@@ -273,7 +271,8 @@ private List<TibTerm> select(String searchTerm, int offset, int limit)
             selectEndpointAbsoluteUrl.toString() +
                 "?q=" + URLEncoder.encode(searchTerm, StandardCharsets.UTF_8) + "&rows="
                 + limit + "&start=" + offset + "&ontology="
-                + createOntologyFilterQueryParameter()))
+                + createOntologyFilterQueryParameter()
+                + "&type=class"))
         .header("Content-Type", "application/json").GET().build();
     var response = HTTP_CLIENT.send(termSelectQuery, BodyHandlers.ofString());
     return parseResponse(response).stream().toList();
@@ -304,7 +303,8 @@ private List<TibTerm> searchByOboId(String oboId, int offset, int limit)
                 oboId.replace("_", ":"), StandardCharsets.UTF_8)
                 + "&queryFields=obo_id"
                 + "&rows=" + limit + "&start=" + offset
-                + "&ontology=" + createOntologyFilterQueryParameter()))
+                + "&ontology=" + createOntologyFilterQueryParameter()
+                + "&type=class"))
         .header("Content-Type", "application/json").GET().build();
     var response = HTTP_CLIENT.send(termSelectQuery, BodyHandlers.ofString());
     return parseResponse(response);
@@ -333,7 +333,8 @@ private Optional<TibTerm> searchByOboIdExact(String oboId)
                 oboId.replace("_", ":"), StandardCharsets.UTF_8)
                 + "&queryFields=obo_id"
                 + "&exact=true"
-                + "&ontology=" + createOntologyFilterQueryParameter()))
+                + "&ontology=" + createOntologyFilterQueryParameter()
+                + "&type=class"))
         .header("Content-Type", "application/json").GET().build();
     var response = HTTP_CLIENT.send(termSelectQuery, BodyHandlers.ofString());
     log.debug("Received response code '%d' for term query %s".formatted(response.statusCode(), oboId));