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Avoid using calibration parameters as input in obscure ways #1381

@RoyStegeman

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@RoyStegeman

In spectroscopy experiments the pulse sequence is constructed using the MZ gate duration and amplitude parameters. While a square pulse is fine, taking the duration and amplitude from the parameters of the MZ obscures what pulse is actually being sent. In the case of resonator punchout attenuation the amplitude is for example the one from MZ while it might make sense to set it to 1.0 or expose it as an input parameter. The duration is taken from this gate as well, which instead should probably an input parameter with sensible default as well or even just e.g. fix it to a microsecond.

I open this issue instead of a PR since I don't know if this experiment is the only such case and I think it would be good to go through all experiments to ensure there are no other situations like this.

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