distributions/data.yaml at dev · qiime2/distributions · GitHub

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# this is the current release epoch (i.e. 20XX.REL)
released_epoch: "2026.1"
# this is the current dev cycle epoch (i.e. 20XX.REL+1)
active_epoch: "2026.4"
# this is the next dev cycle epoch (i.e. 20XX.REL+2)
next_epoch: "2026.7"
distros: [tiny, amplicon, moshpit, pathogenome, test]
packages:

# moshpit proxy package
- name: moshpit
  repo: bokulich-lab/MOSHPIT
  distros: [moshpit]

- name: q2-alignment
  repo: qiime2/q2-alignment
  distros: [amplicon]

- name: q2-amrfinderplus
  repo: bokulich-lab/q2-amrfinderplus
  distros: [pathogenome]

# formerly q2-moshpit
- name: q2-annotate
  repo: bokulich-lab/q2-annotate
  distros: [moshpit]

- name: q2-assembly
  repo: bokulich-lab/q2-assembly
  distros: [moshpit]

- name: q2-boots
  repo: caporaso-lab/q2-boots
  distros: [amplicon]

- name: q2-composition
  repo: qiime2/q2-composition
  distros: [amplicon, test]

- name: q2-cutadapt
  repo: qiime2/q2-cutadapt
  distros: [amplicon, moshpit]

- name: q2-dada2
  repo: qiime2/q2-dada2
  distros: [amplicon]

- name: q2-deblur
  repo: qiime2/q2-deblur
  distros: [amplicon]

- name: q2-demux
  repo: qiime2/q2-demux
  distros: [amplicon, moshpit, pathogenome]

- name: q2-diversity-lib
  repo: qiime2/q2-diversity-lib
  distros: [amplicon]

- name: q2-diversity
  repo: qiime2/q2-diversity
  distros: [amplicon]

- name: q2-emperor
  repo: qiime2/q2-emperor
  distros: [amplicon]

- name: q2-fastp
  repo: bokulich-lab/q2-fastp
  distros: [moshpit]

- name: q2-feature-classifier
  repo: qiime2/q2-feature-classifier
  distros: [amplicon]

- name: q2-feature-table
  repo: qiime2/q2-feature-table
  distros: [amplicon, moshpit, pathogenome]

- name: q2-fondue
  repo: bokulich-lab/q2-fondue
  distros: [amplicon, moshpit, test]

- name: q2-fragment-insertion
  repo: qiime2/q2-fragment-insertion
  distros: [amplicon]

- name: q2-kmerizer
  repo: bokulich-lab/q2-kmerizer
  distros: [amplicon]

- name: q2-longitudinal
  repo: qiime2/q2-longitudinal
  distros: [amplicon]

- name: q2-metadata
  repo: qiime2/q2-metadata
  distros: [tiny, amplicon, moshpit, pathogenome]

- name: q2-mystery-stew
  repo: qiime2/q2-mystery-stew
  distros: [tiny, amplicon, moshpit, pathogenome]

- name: q2-phylogeny
  repo: qiime2/q2-phylogeny
  distros: [amplicon]

- name: q2-quality-control
  repo: qiime2/q2-quality-control
  distros: [amplicon, moshpit]

- name: q2-quality-filter
  repo: qiime2/q2-quality-filter
  distros: [amplicon]

- name: q2-sample-classifier
  repo: qiime2/q2-sample-classifier
  distros: [amplicon]

- name: q2-sapienns
  repo: caporaso-lab/q2-sapienns
  distros: [moshpit]

- name: q2-sourmash
  repo: dib-lab/q2-sourmash
  distros: [moshpit]

- name: q2-stats
  repo: qiime2/q2-stats
  distros: [amplicon]

- name: q2-taxa
  repo: qiime2/q2-taxa
  distros: [amplicon, moshpit]

- name: q2-types
  repo: qiime2/q2-types
  distros: [tiny, amplicon, moshpit, pathogenome, test]

- name: q2-viromics
  repo: bokulich-lab/q2-viromics
  distros: [pathogenome]

- name: q2-vizard
  repo: qiime2/q2-vizard
  distros: [amplicon, moshpit, pathogenome]

- name: q2-vsearch
  repo: qiime2/q2-vsearch
  distros: [amplicon]

- name: q2cli
  repo: qiime2/q2cli
  distros: [tiny, amplicon, moshpit, pathogenome, test]

- name: q2galaxy
  repo: qiime2/q2galaxy
  distros: [amplicon, moshpit]

- name: q2templates
  repo: qiime2/q2templates
  distros: [tiny, amplicon, moshpit, pathogenome, test]

# qiime2 proxy package
- name: qiime2
  repo: qiime2/q2
  distros: [tiny, amplicon, moshpit, pathogenome, test]

# formerly qiime2
- name: rachis
  repo: rachis-org/rachis
  distros: [tiny, amplicon, moshpit, pathogenome, test]

- name: rescript
  repo: bokulich-lab/RESCRIPt
  distros: [amplicon, moshpit]