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Mention ingest and the HNOCA tools
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README.md

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k-NN-based mapping of cells across representations to tranfer labels, embeddings and expression values. Works for millions of cells, on CPU and GPU, across molecular modalities, between spatial and non-spatial data, for arbitrary query and reference datasets. Using [faiss][] to compute k-NN graphs, CellMapper takes about 30 seconds to transfer cell type labels from 1.5M cells to 1.5M cells on a single RTX 4090 with 60 GB CPU memory.
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Inspired by scanpy's [ingest][] and the [HNOCA-tools][] packages.
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## Installation
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You need to have Python 3.10 or newer installed on your system.
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[pypi]: https://pypi.org/project/cellmapper/
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[faiss]: https://github.com/facebookresearch/faiss
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[ingest]: https://scanpy.readthedocs.io/en/stable/generated/scanpy.tl.ingest.html
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[HNOCA-tools]: https://devsystemslab.github.io/HNOCA-tools/
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[GimVI]: https://docs.scvi-tools.org/en/stable/api/reference/scvi.external.GIMVI.html#
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[ENVI]: https://scenvi.readthedocs.io/en/latest/#
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[GLUE]: https://scglue.readthedocs.io/en/latest/

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