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Update tests
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tests/test_cellmapper.py

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -39,10 +39,10 @@ def test_expression_transfer_layers(self, cmap, layer_key):
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assert cmap.query_imputed.X.shape[0] == cmap.query.n_obs
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@pytest.mark.parametrize("eval_layer", ["X", "counts"])
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@pytest.mark.parametrize("corr_method", ["pearson", "spearman"])
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def test_evaluate_expression_transfer_layers_and_methods(self, cmap, eval_layer, corr_method):
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@pytest.mark.parametrize("method", ["pearson", "spearman", "js", "rmse"])
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def test_evaluate_expression_transfer_layers_and_methods(self, cmap, eval_layer, method):
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cmap.transfer_expression(layer_key="X")
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cmap.evaluate_expression_transfer(layer_key=eval_layer, method=corr_method)
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cmap.evaluate_expression_transfer(layer_key=eval_layer, method=method)
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metrics = cmap.expression_transfer_metrics
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assert metrics["method"] == corr_method
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assert metrics["method"] == method
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assert metrics["n_valid_genes"] > 0

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