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nit: style
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aoh/validation/validate_map_prevalence.py

Lines changed: 6 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -108,25 +108,20 @@ def add_predictors_to_aoh_df(aoh_df: pd.DataFrame) -> pd.DataFrame:
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aoh_df['elevation_rangekm'] = aoh_df['elevation_range'] / 1000.0
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aoh_df['elevation_midkm'] = aoh_df['elevation_mid'] / 1000.0
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# Standardize predictors across full dataset
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means = aoh_df.mean(axis=0, numeric_only=True)
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standard_devs = aoh_df.std(axis=0, numeric_only=True)
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aoh_df['std_elevation_rangekm'] = (
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(aoh_df.elevation_rangekm - means.elevation_rangekm) / standard_devs.elevation_rangekm
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)
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aoh_df['std_elevation_midkm'] = (
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(aoh_df.elevation_midkm - means.elevation_midkm) / standard_devs.elevation_midkm
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)
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aoh_df['std_n_habitats'] = (
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(aoh_df.n_habitats - means.n_habitats) / standard_devs.n_habitats
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)
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aoh_df['std_elevation_rangekm'] = (aoh_df.elevation_rangekm - means.elevation_rangekm) \
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/ standard_devs.elevation_rangekm
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aoh_df['std_elevation_midkm'] = (aoh_df.elevation_midkm - means.elevation_midkm) \
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/ standard_devs.elevation_midkm
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aoh_df['std_n_habitats'] = (aoh_df.n_habitats - means.n_habitats) \
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/ standard_devs.n_habitats
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return aoh_df
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def model_validation(aoh_df: pd.DataFrame) -> tuple[pd.DataFrame, pd.DataFrame, pd.DataFrame, pd.DataFrame]:
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"""Run model validation across all taxonomic classes."""
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if pymer4 is None:
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raise ImportError("pymer4 is required for model validation but not installed. "
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"This requires R to be installed on the system.")

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