squash non-ast v1.3 fixes

Author: cscheid

configuration

@@ -8,7 +8,7 @@
 # deno_dom should match release at https://github.com/b-fuze/deno-dom/releases
 
 # Binary dependencies
-export DENO=v1.25.2
+export DENO=v1.26.1
 export DENO_DOM=v0.1.23-alpha-artifacts
 export PANDOC=2.19.2
 export DARTSASS=1.32.8

news/changelog-1.3.md

@@ -1,19 +1,30 @@
-## Article Layout
-
-- Improve the performance of extremely large documents with margin elements by improving the efficiency of positioning the elements.
+## Changes
 
 ## HTML Format
 
-- Improved handling of margin references that appear within a callout. (#3003)
+- Improved handling of margin references that appear within a callout. ([#3003](https://github.com/quarto-dev/quarto-cli/issues/3003))
 - Add support for customizing the baseline widths of grid columns using yaml or scss. For more information, see [https://www.quarto.org/docs/prerelease/1.3.html](https://www.quarto.org/docs/prerelease/1.3.html).
+- Fix wrapping of long `code` entries inside table cells ([#3221](https://github.com/quarto-dev/quarto-cli/issues/3221))
 
 ## Dates
 
 - Properly fall back to language only locale when a supported language-region locale isn't available. (#3059)
 
+## PDF Format
+
+- Fix wrong page number in the TOC for appendices ([#3164](https://github.com/quarto-dev/quarto-cli/issues/3164)) (Thank you, @iusgit!)
+
+## Dates
+
+- Properly fall back to language only locale when a supported language-region locale isn't available. ([#3059](https://github.com/quarto-dev/quarto-cli/issues/3059))
+
 ## About Pages
 
-- Add support for `image-alt` which provides alternate text for the about page image. (#3010)
+- Add support for `image-alt` which provides alternate text for the about page image. ([#3010](https://github.com/quarto-dev/quarto-cli/issues/3010))
+
+## Article Layout
+
+- Improve the performance of extremely large documents with margin elements by improving the efficiency of positioning the elements.
 
 ## Listings
 
@@ -22,4 +33,6 @@
 
 ## Miscellaneous
 
+- Work around pandoc strict checking of `number-offset` type. ([#3126](https://github.com/quarto-dev/quarto-cli/issues/3126))
+- Warn instead of crash on bad URI ([#3220](https://github.com/quarto-dev/quarto-cli/issues/3220))
 - ensure `video` shortcode works with `embed-resources` and `self-contained` ([#3310](https://github.com/quarto-dev/quarto-cli/issues/3310))

package/scripts/deno_std/deno_std.ts

@@ -1,34 +1,33 @@
 // deno-lint-ignore-file
-import * as archive from "https://deno.land/[email protected]/archive/tar.ts";
-import * as async from "https://deno.land/[email protected]/async/mod.ts";
-import * as bytes from "https://deno.land/[email protected]/bytes/mod.ts";
-import * as collections from "https://deno.land/[email protected]/collections/mod.ts";
-import * as crypto from "https://deno.land/[email protected]/crypto/mod.ts";
-import * as datetime from "https://deno.land/[email protected]/datetime/mod.ts";
-import * as encoding_ascii85 from "https://deno.land/[email protected]/encoding/ascii85.ts";
-import * as encoding_base32 from "https://deno.land/[email protected]/encoding/base32.ts";
-import * as encoding_base64 from "https://deno.land/[email protected]/encoding/base64.ts";
-import * as encoding_base64url from "https://deno.land/[email protected]/encoding/base64url.ts";
-import * as encoding_binary from "https://deno.land/[email protected]/encoding/binary.ts";
-import * as encoding_csv_stringify from "https://deno.land/[email protected]/encoding/csv_stringify.ts";
-import * as encoding_csv from "https://deno.land/[email protected]/encoding/csv.ts";
-import * as encoding_hex from "https://deno.land/[email protected]/encoding/hex.ts";
-import * as encoding_toml from "https://deno.land/[email protected]/encoding/toml.ts";
-import * as encoding_yaml from "https://deno.land/[email protected]/encoding/yaml.ts";
-import * as flags from "https://deno.land/[email protected]/flags/mod.ts";
-import * as fmt_bytes from "https://deno.land/[email protected]/fmt/bytes.ts";
-import * as fmt_colors from "https://deno.land/[email protected]/fmt/colors.ts";
-import * as fmt_printf from "https://deno.land/[email protected]/fmt/printf.ts";
-import * as fs from "https://deno.land/[email protected]/fs/mod.ts";
-import * as fs_copy from "https://deno.land/[email protected]/fs/copy.ts";
-import * as hash from "https://deno.land/[email protected]/hash/mod.ts";
-import * as http from "https://deno.land/[email protected]/http/mod.ts";
-import * as io from "https://deno.land/[email protected]/io/mod.ts";
-import * as log from "https://deno.land/[email protected]/log/mod.ts";
-import * as media_types from "https://deno.land/[email protected]/media_types/mod.ts";
-import * as path from "https://deno.land/[email protected]/path/mod.ts";
-import * as permissions from "https://deno.land/[email protected]/permissions/mod.ts";
-import * as signal from "https://deno.land/[email protected]/signal/mod.ts";
-import * as streams from "https://deno.land/[email protected]/streams/mod.ts";
-import * as textproto from "https://deno.land/[email protected]/textproto/mod.ts";
-import * as uuid from "https://deno.land/[email protected]/uuid/mod.ts";
+import * as archive from "https://deno.land/[email protected]/archive/tar.ts";
+import * as async from "https://deno.land/[email protected]/async/mod.ts";
+import * as bytes from "https://deno.land/[email protected]/bytes/mod.ts";
+import * as collections from "https://deno.land/[email protected]/collections/mod.ts";
+import * as crypto from "https://deno.land/[email protected]/crypto/mod.ts";
+import * as datetime from "https://deno.land/[email protected]/datetime/mod.ts";
+import * as encoding_ascii85 from "https://deno.land/[email protected]/encoding/ascii85.ts";
+import * as encoding_base32 from "https://deno.land/[email protected]/encoding/base32.ts";
+import * as encoding_base64 from "https://deno.land/[email protected]/encoding/base64.ts";
+import * as encoding_base64url from "https://deno.land/[email protected]/encoding/base64url.ts";
+import * as encoding_binary from "https://deno.land/[email protected]/encoding/binary.ts";
+import * as encoding_csv from "https://deno.land/[email protected]/encoding/csv.ts";
+import * as encoding_hex from "https://deno.land/[email protected]/encoding/hex.ts";
+import * as encoding_toml from "https://deno.land/[email protected]/encoding/toml.ts";
+import * as encoding_yaml from "https://deno.land/[email protected]/encoding/yaml.ts";
+import * as flags from "https://deno.land/[email protected]/flags/mod.ts";
+import * as fmt_bytes from "https://deno.land/[email protected]/fmt/bytes.ts";
+import * as fmt_colors from "https://deno.land/[email protected]/fmt/colors.ts";
+import * as fmt_printf from "https://deno.land/[email protected]/fmt/printf.ts";
+import * as fs from "https://deno.land/[email protected]/fs/mod.ts";
+import * as fs_copy from "https://deno.land/[email protected]/fs/copy.ts";
+import * as hash from "https://deno.land/[email protected]/hash/mod.ts";
+import * as http from "https://deno.land/[email protected]/http/mod.ts";
+import * as io from "https://deno.land/[email protected]/io/mod.ts";
+import * as log from "https://deno.land/[email protected]/log/mod.ts";
+import * as media_types from "https://deno.land/[email protected]/media_types/mod.ts";
+import * as path from "https://deno.land/[email protected]/path/mod.ts";
+import * as permissions from "https://deno.land/[email protected]/permissions/mod.ts";
+import * as signal from "https://deno.land/[email protected]/signal/mod.ts";
+import * as streams from "https://deno.land/[email protected]/streams/mod.ts";
+import * as textproto from "https://deno.land/[email protected]/textproto/mod.ts";
+import * as uuid from "https://deno.land/[email protected]/uuid/mod.ts";

package/scripts/vendoring/vendor.sh

@@ -1,16 +1,5 @@
 #!/bin/bash
 
-# Before you run this, make sure that you've edited the quarto source code
-# to remove the references to JSON imports, since these currently
-# trigger bugs in `deno vendor`.
-
-# The easy way to find these is to search for 'assert: { type: "json" }'
-# in VS code:
-
-# src/core/schema/utils.ts:23
-# src/core/lib/yaml-intelligence/yaml-intelligence.ts:1175
-# src/core/lib/yaml-intelligence/parsing.ts:60
-
 source configuration
 
 # Defaults are set in configuration file, but can be overridden here.

package/src/common/configure.ts

@@ -66,10 +66,12 @@ export async function configure(
       join(config.directoryInfo.bin, "quarto.cmd"),
     );
   } else {
+    const out = join(config.directoryInfo.bin, "quarto");
     Deno.copyFileSync(
       join(config.directoryInfo.pkg, "scripts", "common", "quarto"),
-      join(config.directoryInfo.bin, "quarto"),
+      out,
     );
+    Deno.chmodSync(out, 0o755);
   }
 
   // record dev config. These are versions as defined in the root configuration file.

package/src/common/prepare-dist.ts

@@ -14,7 +14,7 @@ import { buildFilter } from "./package-filters.ts";
 import { bundle } from "../util/deno.ts";
 import { info } from "log/mod.ts";
 import { buildAssets } from "../../../src/command/build-js/cmd.ts";
-import { initTreeSitter } from "../../../src/core/lib/yaml-validation/deno-init-tree-sitter.ts";
+import { initTreeSitter } from "../../../src/core/schema/deno-init-tree-sitter.ts";
 
 export async function prepareDist(
   config: Configuration,
@@ -143,14 +143,9 @@ function inlineFilters(config: Configuration) {
   info("Building inlined filters");
   const outDir = join(config.directoryInfo.share, "filters");
   const filtersToInline: Filter[] = [
-    { name: "quarto-init" },
-    { name: "authors" },
-    { name: "quarto-pre" },
-    { name: "crossref" },
-    { name: "layout" },
-    { name: "quarto-post" },
+    { name: "main", dir: "." },
     { name: "pagebreak", dir: "rmarkdown" },
-    { name: "quarto-finalize" },
+    { name: "customwriter", dir: "customwriter" },
   ];
 
   filtersToInline.forEach((filter) => {

package/src/util/utils.ts

@@ -1,4 +1,4 @@
-import { writeAll } from "io/mod.ts";
+import { writeAll } from "streams/conversion.ts";
 import { CmdResult, runCmd } from "./cmd.ts";
 
 // Read an environment variable

src/command/capabilities/cmd.ts

@@ -5,7 +5,7 @@
 *
 */
 
-import { writeAllSync } from "io/mod.ts";
+import { writeAllSync } from "streams/conversion.ts";
 
 import { Command } from "cliffy/command/mod.ts";
 import { capabilities } from "./capabilities.ts";

src/command/convert/observable.ts

@@ -9,7 +9,7 @@ import { info, warning } from "log/mod.ts";
 import * as colors from "fmt/colors.ts";
 
 import { basename, dirname, join } from "path/mod.ts";
-import { writeAll } from "io/mod.ts";
+import { writeAll } from "streams/conversion.ts";
 import { ensureDirSync } from "fs/mod.ts";
 import { pandocAutoIdentifier } from "../../core/pandoc/pandoc-id.ts";
 

src/command/create/cmd.ts

@@ -100,7 +100,7 @@ export const createCommand = new Command()
         open?: string | boolean;
       },
       type?: string,
-      commands?: string[],
+      ...commands: string[]
     ) => {
       if (options.json) {
         await createFromStdin();
@@ -122,7 +122,7 @@ export const createCommand = new Command()
           // If we aliased the type, shift the args (including what was
           // the type alias in the list of args for the artifact creator
           // to resolve)
-          const args = commands || [];
+          const args = commands;
 
           const commandOpts = resolvedArtifact.resolveOptions(args);
           const createOptions = {