Merge branch 'main' into deps/julia-updates

Author: cderv

.github/workflows/test-smokes.yml

@@ -1,5 +1,5 @@
 # Tests a broad set of Quarto functionality that users are likely to encounter.
-# A failure indicates some signficant portion of functionality is likely to be broken.
+# A failure indicates some significant portion of functionality is likely to be broken.
 name: Smoke Tests
 on:
   workflow_call:
@@ -112,9 +112,9 @@ jobs:
           path: |
             ${{ env.RENV_PATHS_ROOT }}
             renv/library
-          key: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-renv-1-${{ hashFiles('tests/renv.lock') }}
+          key: ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-renv-2-${{ hashFiles('tests/renv.lock') }}
           restore-keys: |
-            ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-renv-1-
+            ${{ steps.get-version.outputs.os-version }}-${{ steps.get-version.outputs.r-version }}-renv-2-
 
       - name: Install missing system deps
         if: runner.os == 'Linux'
@@ -135,13 +135,12 @@ jobs:
           try(install.packages('rmarkdown', repos = c('https://rstudio.r-universe.dev', getOption('repos'))))
           try(install.packages('knitr', repos = c('https://yihui.r-universe.dev', getOption('repos'))))
           if ('${{ inputs.extra-r-packages }}' != '') {
-            cat(sprintf("::notice::Running with the following extra R packages for pak: %s\n", "${{ inputs.extra-r-packages }}"))
+            cat(sprintf("::notice::Running with the following extra R packages for renv: %s\n", "${{ inputs.extra-r-packages }}"))
             renv::install(strsplit("${{ inputs.extra-r-packages }}", split = ",")[[1]])
           }
         shell: Rscript {0}
         env:
           GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-          RENV_CONFIG_PAK_ENABLED: TRUE
 
       - name: Show R session information
         working-directory: tests

tests/DESCRIPTION

@@ -1,20 +1,28 @@
 Type: tests
 Description: Quarto tests projects
 Depends:
-    rmarkdown,
-    knitr,
-    shiny,
+    bsicons,
+    bslib,
+    colorspace,
+    DBI,
     downlit,
-    tidyverse,
-    ggplot2,
+    dplyr,
+    DT,
+    flextable,
     ggExtra,
-    scales,
-    kableExtra,
+    ggplot2,
     gt,
-    flextable,
-    tibble,
-    DT,
-    DBI,
+    kableExtra,
+    knitr,
+    openssl,
+    renv,
+    rmarkdown,
     RSQLite,
+    scales,
+    shiny,
+    stats,
+    tibble,
+    tidyverse,
+    tinytex,
     webshot2,
-    bsicons
+    yaml

tests/renv.lock

@@ -994,6 +994,60 @@
       "Maintainer": "Matthew Lincoln <[email protected]>",
       "Repository": "RSPM"
     },
+    "colorspace": {
+      "Package": "colorspace",
+      "Version": "2.1-2",
+      "Source": "Repository",
+      "Date": "2025-09-22",
+      "Title": "A Toolbox for Manipulating and Assessing Colors and Palettes",
+      "Authors@R": "c(person(given = \"Ross\", family = \"Ihaka\", role = \"aut\", email = \"[email protected]\"), person(given = \"Paul\", family = \"Murrell\", role = \"aut\", email = \"[email protected]\", comment = c(ORCID = \"0000-0002-3224-8858\")), person(given = \"Kurt\", family = \"Hornik\", role = \"aut\", email = \"[email protected]\", comment = c(ORCID = \"0000-0003-4198-9911\")), person(given = c(\"Jason\", \"C.\"), family = \"Fisher\", role = \"aut\", email = \"[email protected]\", comment = c(ORCID = \"0000-0001-9032-8912\")), person(given = \"Reto\", family = \"Stauffer\", role = \"aut\", email = \"[email protected]\", comment = c(ORCID = \"0000-0002-3798-5507\")), person(given = c(\"Claus\", \"O.\"), family = \"Wilke\", role = \"aut\", email = \"[email protected]\", comment = c(ORCID = \"0000-0002-7470-9261\")), person(given = c(\"Claire\", \"D.\"), family = \"McWhite\", role = \"aut\", email = \"[email protected]\", comment = c(ORCID = \"0000-0001-7346-3047\")), person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"[email protected]\", comment = c(ORCID = \"0000-0003-0918-3766\")))",
+      "Description": "Carries out mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB, and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided along with corresponding ggplot2 color scales. Color palette choice is aided by an interactive app (with either a Tcl/Tk or a shiny graphical user interface) and shiny apps with an HCL color picker and a color vision deficiency emulator. Plotting functions for displaying and assessing palettes include color swatches, visualizations of the HCL space, and trajectories in HCL and/or RGB spectrum. Color manipulation functions include: desaturation, lightening/darkening, mixing, and simulation of color vision deficiencies (deutanomaly, protanomaly, tritanomaly). Details can be found on the project web page at <https://colorspace.R-Forge.R-project.org/> and in the accompanying scientific paper: Zeileis et al. (2020, Journal of Statistical Software, <doi:10.18637/jss.v096.i01>).",
+      "Depends": [
+        "R (>= 3.0.0)",
+        "methods"
+      ],
+      "Imports": [
+        "graphics",
+        "grDevices",
+        "stats"
+      ],
+      "Suggests": [
+        "datasets",
+        "utils",
+        "KernSmooth",
+        "MASS",
+        "kernlab",
+        "mvtnorm",
+        "vcd",
+        "tcltk",
+        "shiny",
+        "shinyjs",
+        "ggplot2",
+        "dplyr",
+        "scales",
+        "grid",
+        "png",
+        "jpeg",
+        "knitr",
+        "rmarkdown",
+        "RColorBrewer",
+        "rcartocolor",
+        "scico",
+        "viridis",
+        "wesanderson"
+      ],
+      "VignetteBuilder": "knitr",
+      "License": "BSD_3_clause + file LICENSE",
+      "URL": "https://colorspace.R-Forge.R-project.org/, https://hclwizard.org/",
+      "BugReports": "https://colorspace.R-Forge.R-project.org/contact.html",
+      "LazyData": "yes",
+      "Encoding": "UTF-8",
+      "RoxygenNote": "7.3.2",
+      "NeedsCompilation": "yes",
+      "Author": "Ross Ihaka [aut], Paul Murrell [aut] (ORCID: <https://orcid.org/0000-0002-3224-8858>), Kurt Hornik [aut] (ORCID: <https://orcid.org/0000-0003-4198-9911>), Jason C. Fisher [aut] (ORCID: <https://orcid.org/0000-0001-9032-8912>), Reto Stauffer [aut] (ORCID: <https://orcid.org/0000-0002-3798-5507>), Claus O. Wilke [aut] (ORCID: <https://orcid.org/0000-0002-7470-9261>), Claire D. McWhite [aut] (ORCID: <https://orcid.org/0000-0001-7346-3047>), Achim Zeileis [aut, cre] (ORCID: <https://orcid.org/0000-0003-0918-3766>)",
+      "Maintainer": "Achim Zeileis <[email protected]>",
+      "Repository": "P3M"
+    },
     "colourpicker": {
       "Package": "colourpicker",
       "Version": "1.3.0",