Leave explictly created ref divs alone

We will no incorporate an explicitly created refs target into the appendix.

Author: dragonstyle

src/command/render/types.ts

@@ -17,6 +17,7 @@ import { Metadata } from "../../config/types.ts";
 import { ProjectContext } from "../../project/types.ts";
 import { TempContext } from "../../core/temp-types.ts";
 import { ExtensionContext } from "../../extension/extension-shared.ts";
+import { kPositionedRefs } from "../../config/constants.ts";
 
 // options for render
 export interface RenderOptions {
@@ -57,7 +58,7 @@ export interface RunPandocResult {
 }
 
 export interface PandocInputTraits {
-  bibliographyTarget?: boolean;
+  [kPositionedRefs]?: boolean;
 }
 
 export type HtmlPostProcessor = (

src/config/constants.ts

@@ -443,6 +443,9 @@ export const kTblCapLoc = "tbl-cap-location";
 export const kCapTop = "top";
 export const kCapBottom = "bottom";
 
+// Pandoc Input Traits
+export const kPositionedRefs = "positioned-refs";
+
 // https://pandoc.org/MANUAL.html#default-files
 // note: we are keeping some things out of 'defaults' b/ca
 // they are known to be valid in metadata. this includes:

src/format/html/format-html-appendix.ts

@@ -5,10 +5,12 @@
 *
 */
 
+import { PandocInputTraits } from "../../command/render/types.ts";
 import {
   kAppendixAttributionBibTex,
   kAppendixAttributionCiteAs,
   kLang,
+  kPositionedRefs,
   kSectionTitleCitation,
   kSectionTitleReuse,
 } from "../../config/constants.ts";
@@ -51,6 +53,7 @@ const kAppendixId = "quarto-appendix";
 
 export async function processDocumentAppendix(
   input: string,
+  inputTraits: PandocInputTraits,
   format: Format,
   flags: PandocFlags,
   doc: Document,
@@ -102,7 +105,7 @@ export async function processDocumentAppendix(
     };
 
     // Move the refs into the appendix
-    if (!hasMarginCites(format)) {
+    if (!hasMarginCites(format) && !inputTraits[kPositionedRefs]) {
       const refsEl = doc.getElementById("refs");
       if (refsEl) {
         const findRefTitle = (refsEl: Element) => {

src/format/html/format-html-bootstrap.ts

@@ -28,6 +28,7 @@ import {
   kHtmlFinalizers,
   kHtmlPostprocessors,
   kSassBundles,
+  Metadata,
   SassLayer,
 } from "../../config/types.ts";
 import { PandocFlags } from "../../config/types.ts";
@@ -49,6 +50,7 @@ import {
 import {
   HtmlPostProcessor,
   HtmlPostProcessResult,
+  PandocInputTraits,
 } from "../../command/render/types.ts";
 import { processDocumentAppendix } from "./format-html-appendix.ts";
 import {
@@ -211,6 +213,8 @@ function bootstrapHtmlPostprocessor(
 ): HtmlPostProcessor {
   return async (
     doc: Document,
+    _inputMedata: Metadata,
+    inputTraits: PandocInputTraits,
   ): Promise<HtmlPostProcessResult> => {
     // use display-7 style for title
     const title = doc.querySelector("header > .title");
@@ -356,7 +360,7 @@ function bootstrapHtmlPostprocessor(
       format.metadata[kAppendixStyle] !== false &&
       format.metadata[kAppendixStyle] !== "none"
     ) {
-      await processDocumentAppendix(input, format, flags, doc, offset);
+      await processDocumentAppendix(input, inputTraits, format, flags, doc, offset);
     }
 
     // no resource refs