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Answering my own question! The answer is: "No, I'm not correct!" . Quarto DOES allow you to set up separate side nav for subsections of the site that are nested within a top-nav dropdown menu. Here's an example of a _quarto.yml that has this effect:

project:
  type: website

website:
  title: "FANTASTIC WEBSITE!"
  navbar:
    background: primary
    right:
      - text: "Section"
        menu: 
          - text: "SubSection 1"
            file: subsection1/index.qmd 
          - text: "SubSection 2"
            file: subsection2/index.qmd
        
  sidebar:
    - title: "SubSection 1"
      contents:
        - subsection1/index.qmd
        - subsection1/article1.qmd
        - subsection…

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Answer selected by stuvjordan-uroc
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