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The best solution will be for you to write a filter to catch Note AST elements, collect all of them, and then create a new section in the end with all of their content. It's doable, but will require some Lua: https://pandoc.org/lua-filters.html#type-note

It might be much easier than that. Take a look at this comment in a pandoc issue: jgm/pandoc#4041 (comment)

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@DamonCharlesRoberts
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@cscheid
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